GPU-based 3D discrete element method algorithm with optional fluid coupling
git clone git://src.adamsgaard.dk/sphere
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DateCommit messageAuthorFiles+-
2019-09-06 12:22Drop .txt extension from LICENSEAnders Damsgaard1+0-0
2019-09-02 13:31Fix calculation of reynolds number and visualization callsAnders Damsgaard1+13-12
2019-09-02 13:20Fix continued line indentationAnders Damsgaard1+138-103
2019-09-02 12:45Perform many stylistic improvements based on pylintAnders Damsgaard1+1871-2028
2019-09-02 09:30Merge branch 'master' of gitlab.com:admesg/sphereAnders Damsgaard1+4-1
2019-09-02 09:28Update documentation, fix adjustWall docstring, remove unused parameterAnders Damsgaard488+2818-17603
2019-09-02 09:12Only clean documentation output directoriesAnders Damsgaard1+2-1
2019-09-02 08:53Update name and dateAnders Damsgaard1+1-1
2019-09-02 08:50Use snprintf over sprintfAnders Damsgaard1+2-2
2019-09-02 08:48Use snprintf over sprintfAnders Damsgaard1+4-3
2019-09-02 08:06Check if some output VTK file exist before writing all againAnders Damsgaard1+33-18
2019-09-02 04:51Fix ffmpeg argumentsAnders Damsgaard1+12-8
2019-09-02 04:38Use correct syntax when checking boolsAnders Damsgaard1+11-11
2019-09-02 04:35Fix video functionalityAnders Damsgaard1+19-15
2019-09-02 04:19Use consistent format for function definitions and default argument valuesAnders Damsgaard1+1527-1659
2019-09-02 04:06Matplotlib works as optional dependency, fix plotting calls, add verbose optionAnders Damsgaard1+162-54
2019-08-22 09:06Convert diagnostrics script to posix shellAnders Damsgaard1+2-2
2019-08-21 07:02Disable wall viscosities by defaultAnders Damsgaard1+3-3
2019-08-19 09:21Update paraview custom filterAnders Damsgaard1+102-92
2019-08-19 09:18Add install note for vtk python moduleAnders Damsgaard1+1-0
2019-08-15 14:43Fix string split for python3Anders Damsgaard1+3-3
2019-08-15 14:05Fix scripts after changing np and nw to intsAnders Damsgaard10+10-10
2019-08-15 13:58Fix py3 comparison between spherebin objectsAnders Damsgaard1+98-98
2019-08-15 13:49Begin implementing Python3 compabilityAnders Damsgaard2+183-183
2019-04-27 12:27Add support for CUDA compute capabilities 4.x, 6.2, and 7.xAnders Damsgaard1+7-0
2019-04-18 18:58Merge branch 'master' of github.com:anders-dc/sphereAnders Damsgaard13+0-0
2019-04-06 10:22Spring cleaning: Remove old and unused codeAnders Damsgaard2+1-438
2018-04-13 16:01Add options to smooth shear visualizationAnders Damsgaard1+47-7
2018-01-22 14:57Add more grains and change length of consolidation and relaxationAnders Damsgaard1+6-5
2017-12-21 01:30Add note on acknowledging sphere in publicationsAnders Damsgaard1+4-0
2017-12-21 01:28Update publication listAnders Damsgaard1+12-7
2017-12-21 01:24Set `nw` to int during `adjustUpperWall()`Anders Damsgaard1+1-1
2017-12-21 01:22Update calls to `consolidate()` and `shear()`, decrease contact viscosity during initializationAnders Damsgaard1+5-5
2017-12-21 01:22Add additional argument type enforcingAnders Damsgaard1+3-3
2017-12-20 12:58Add checkerboard colors, update status call syntaxAnders Damsgaard1+20-8
2017-12-19 18:31Decrease grain count, use log-normal PSD, and increase grain size and time step safety parameterAnders Damsgaard1+3-3
2017-12-19 18:25Disable rendering, fix typosAnders Damsgaard1+3-4
2017-12-19 18:24Make sure np and nd are cast to intsAnders Damsgaard1+2-2
2017-12-19 18:03Add shear simulation with different initial overconsolidation ratiosAnders Damsgaard1+180-0
2017-10-28 16:52add publicationt to README, add -fPIC to CXX flagsAnders Damsgaard2+7-1
2017-10-28 16:43fix reStructuredText code block syntaxAnders Damsgaard1+1-1
2017-10-28 16:41fix readability issue in READMEAnders Damsgaard1+3-2
2017-10-18 13:28fix comment for void ratio computationAnders Damsgaard1+1-1
2017-09-08 18:55remove tab charactersAnders Damsgaard1+11-11
2017-09-08 14:29update shear test exampleAnders Damsgaard1+16-11
2017-09-08 00:25update documentationAnders Damsgaard17+218-213
2017-09-07 21:46fix file pathAnders Damsgaard1+1-1
2017-09-07 21:43download helper_math.h from the netAnders Damsgaard1+4-0
2017-09-07 20:09rebuild documentationAnders Damsgaard36+11615-9341
2017-09-07 19:57add note on clang-3.8 in READMEAnders Damsgaard1+5-0
2017-09-07 19:54fix various minor issues related to memory initialization, suggest clang-3.8 to nvcc as ccbinAnders Damsgaard4+49-41
2017-09-07 14:47include string in header fileAnders Damsgaard1+1-0
2017-09-06 20:45add -fPIC compiler flagAnders Damsgaard1+1-0
2017-09-06 20:33set output path adequatelyAnders Damsgaard1+5-4
2017-07-27 09:08add script for J Glaciol manuscriptAnders Damsgaard1+243-0
2017-07-11 09:05update contact informationAnders Damsgaard1+2-4
2017-06-20 01:13fix additional problems with newest numpy versionAnders Damsgaard1+98-98
2017-06-19 23:54fix problems in __init__ with newest numpy versionAnders Damsgaard1+49-37
2017-06-02 18:04add comment on how to visualize the force networkAnders Damsgaard1+6-0
2017-05-09 15:28remove extra delta_t increaseAnders Damsgaard1+0-3
2017-02-23 23:05Merge branch 'master' of github.com:anders-dc/sphereAnders Damsgaard14+617-181
2017-02-23 23:04add information on clustersAnders Damsgaard1+9-2
2016-09-27 21:09improve porosity estimation at top BCAnders Damsgaard Christensen2+11-7
2016-09-20 16:57Merge branch 'master' of github.com:anders-dc/sphereAnders Damsgaard Christensen2+46-1
2016-09-20 16:56fix function callAnders Damsgaard Christensen1+1-1
2016-09-13 16:59fix density data typeAnders Damsgaard Christensen1+1-1
2016-09-12 20:03disable viscosities during consolidation and shearAnders Damsgaard Christensen1+9-1
2016-09-12 17:13fix adaptive parameter typeAnders Damsgaard Christensen1+1-1
2016-09-12 16:43fix rho data typeAnders Damsgaard Christensen1+2-2
2016-09-09 23:06decrease Young's modulusAnders Damsgaard Christensen1+1-1
2016-09-09 22:04add fluid-creep experiment, add function for basing permeability on grain sizeAnders Damsgaard Christensen2+236-0
2016-09-09 21:56fix compressibility of waterAnders Damsgaard Christensen1+2-2
2016-09-09 19:53add example values for Young's modulusAnders Damsgaard Christensen1+3-0
2016-09-09 17:38add test with adaptive fluid gridAnders Damsgaard Christensen1+159-0
2016-09-09 17:16fix wall indexationAnders Damsgaard Christensen1+1-1
2016-09-09 17:15set total mass to equal grain mass during consolidationAnders Damsgaard Christensen1+2-1
2016-09-08 20:47fix grid height adaptationAnders Damsgaard Christensen1+30-6
2016-09-02 22:45add file I/O for readjusting the grid sizeAnders Damsgaard Christensen3+34-2
2016-09-02 22:39implement first attempt at adaptive meshingAnders Damsgaard Christensen3+29-0
2016-08-26 21:53do not zero fluid-pressure gradient unless top is Dirichlet BCAnders Damsgaard Christensen1+1-1
2016-08-25 17:03set dynamic wall mass to equal total grain massAnders Damsgaard Christensen1+2-1
2016-08-24 18:39Merge branch 'master' of github.com:anders-dc/sphereAnders Damsgaard Christensen1+9-0
2016-08-24 18:23only restrict f_p.z at top when there is constant pressureAnders Damsgaard Christensen2+3-1
2016-08-16 19:45decrease elastic stiffness for testsAnders Damsgaard Christensen2+13-13
2016-08-16 19:12add tests for contact model based on Young's modulusAnders Damsgaard Christensen3+353-0
2016-08-16 19:10report choice of contact stiffness model in dry runAnders Damsgaard Christensen1+5-0
2016-08-16 18:56fix minor implementation errorsAnders Damsgaard Christensen1+12-7
2016-08-16 18:52use Youngs' modulus for scale-invariant contact stiffnessAnders Damsgaard Christensen7+85-13
2016-08-12 20:59complete test to verify horizontal pressure gradientAnders Damsgaard Christensen1+4-11
2016-08-12 20:18change default side BC to periodicAnders Damsgaard Christensen1+4-4
2016-08-12 20:04set periodic as default lateral fluid BCAnders Damsgaard Christensen1+4-4
2016-08-12 19:53remove unused modulesAnders Damsgaard Christensen1+5-5
2016-08-12 19:49remove extra newlinesAnders Damsgaard Christensen1+0-2
2016-08-12 19:43only check particle positions when np>0Anders Damsgaard Christensen2+10-10
2016-08-12 18:49delete extra readAnders Damsgaard Christensen1+0-1
2016-08-12 18:45print parameter name in comparison outputAnders Damsgaard Christensen1+106-111
2016-08-12 18:36Merge branch 'master' of github.com:anders-dc/sphereAnders Damsgaard Christensen3+29-30
2016-08-12 18:35bugfixesAnders Damsgaard Christensen2+5-1
2016-08-12 17:47Merge branch 'master' of github.com:anders-dc/sphereAnders Damsgaard Christensen2+108-5
2016-08-12 17:46add test for fixed pressure BCs at XAnders Damsgaard Christensen1+32-0
2016-08-11 23:01add BC parameter to file/data structures, add utility functionsAnders Damsgaard Christensen3+133-12
2016-08-11 18:50pass new BC flags to cuda kernelsAnders Damsgaard Christensen2+44-6
2016-08-11 18:43add Neumann BCs to iterative solutionAnders Damsgaard Christensen1+8-1
2016-08-11 18:39add Neumann BC at side boundariesAnders Damsgaard Christensen1+8-1
2016-08-11 18:36add dirichlet BC for xy boundaries in Darcy solverAnders Damsgaard Christensen1+12-8
2016-08-11 17:56begin implementation of non-periodic x/y boundariesAnders Damsgaard Christensen3+39-12
2016-06-17 16:51add rs2 experiment generation scriptAnders Damsgaard Christensen1+172-0
2016-06-17 16:46delay velocity step 5sAnders Damsgaard Christensen1+2-2
2016-06-16 21:51improve rate-state visualizationAnders Damsgaard Christensen1+436-3
2016-06-16 17:43add script to visualize rs0 outputAnders Damsgaard Christensen1+27-0
2016-06-16 17:43fix jobname prefix usageAnders Damsgaard Christensen1+1-1
2016-06-16 01:16change domain size to equal other simulationAnders Damsgaard Christensen1+1-1
2016-06-16 01:14change particle countAnders Damsgaard Christensen1+1-1
2016-06-16 01:10change world size, particle number, add wall viscous dampingAnders Damsgaard Christensen1+4-4
2016-06-16 00:30add initialization and consolidation scriptAnders Damsgaard Christensen1+103-0
2016-06-15 23:05add fix for elevated porosities at frictionless side boundariesAnders Damsgaard Christensen2+12-8
2016-06-15 22:41revert to previous logicAnders Damsgaard Christensen2+10-82
2016-06-15 22:03use dedicated function during porosity searchAnders Damsgaard Christensen1+1-1
2016-06-15 21:45mirror particle grid for porosity estimation at frictionless wallsAnders Damsgaard Christensen2+81-2
2016-06-14 14:45add new rate-state generation scriptAnders Damsgaard Christensen1+172-0
2016-06-13 16:17decrease dampingAnders Damsgaard1+1-1
2016-06-10 17:48add function for total grain mass, add script for heavy wall simAnders Damsgaard Christensen2+174-0
2016-06-06 18:28add script for faster high shear-strain experimentsAnders Damsgaard1+160-0
2016-06-04 23:46fix cons simulation nameAnders Damsgaard Christensen1+1-1
2016-06-04 23:42read correct consolidation inputAnders Damsgaard Christensen1+2-1
2016-06-04 23:30fix ref to effective stressAnders Damsgaard Christensen1+1-1
2016-06-04 19:02run on device 0Anders Damsgaard Christensen1+1-1
2016-06-04 18:55add string delimiters to ID callsAnders Damsgaard Christensen2+2-2
2016-06-04 15:13add initialized packing of 10,000 particlesAnders Damsgaard Christensen2+1-0
2016-06-04 15:11add script for generating various preconsolidated packingsAnders Damsgaard Christensen1+138-0
2016-06-04 15:11Merge branch 'master' of github.com:anders-dc/sphereAnders Damsgaard Christensen1+50-0
2016-06-04 15:10fix function callsAnders Damsgaard Christensen1+4-8
2016-06-02 22:56generate python and slurm scriptsAnders Damsgaard Christensen2+171-56
2016-06-02 22:19add preliminary job generation scriptAnders Damsgaard Christensen1+56-0
2016-04-25 18:00add new initialized particle cubeAnders Damsgaard Christensen2+1-1
2016-04-13 16:54revert rate-state.py to orig, add new script with faster shearAnders Damsgaard2+2-3
2016-04-13 16:53increase shear velocity tenfoldAnders Damsgaard2+4-3
2016-04-08 19:38increase velocity step factor to 10xAnders Damsgaard4+76-53
2016-04-04 17:09use cubic particle assemblageAnders Damsgaard1+7-6
2016-04-04 16:43fix velocity steppingAnders Damsgaard2+8-3
2016-04-01 16:52increaste stiffnessAnders Damsgaard2+3-3
2016-03-31 22:17shorter simulation id for dry experimentsAnders Damsgaard1+1-3
2016-03-31 22:16change simulation idAnders Damsgaard1+4-4
2016-03-31 22:14fix shear function callAnders Damsgaard1+1-1
2016-03-31 22:14Merge branch 'master' of github.com:anders-dc/sphereAnders Damsgaard12+459-59
2016-03-31 22:13reduce N in channel experimentAnders Damsgaard1+1-1
2016-03-05 17:22fix effective stress magnitude in simulation IDAnders Damsgaard1+1-1
2016-03-05 17:21update figures for paper 3Anders Damsgaard2+38-23
2016-03-05 17:21Merge branch 'master' of github.com:anders-dc/sphereAnders Damsgaard4+202-5
2016-03-05 17:21add channel scriptAnders Damsgaard1+155-0
2016-02-26 19:03improve fluid debugging outputAnders Damsgaard2+31-20
2016-02-25 23:42also zero forces and torques, change file modeAnders Damsgaard2+2-0
2016-02-16 18:20Merge branch 'master' of github.com:anders-dc/sphereAnders Damsgaard3+5-5
2016-02-16 18:20remove specific call to gcc-4.6Anders Damsgaard1+4-2
2016-02-09 23:29add TCD publication infoAnders Damsgaard1+2-2
2016-01-26 22:57do not remove NS values when Darcian fluid is selectedAnders Damsgaard1+5-3
2015-12-04 18:02increase size of arraysAnders Damsgaard1+1-1
2015-09-25 09:07add flux BC testAnders Damsgaard1+28-2
2015-09-23 08:10fix compatibility with VTK 6Anders Damsgaard1+2-1
2015-09-06 06:52fix typoAnders Damsgaard1+1-1
2015-09-06 06:51add ref to tcdAnders Damsgaard1+4-0
2015-09-06 06:48add note on cuda 7Anders Damsgaard1+2-1
2015-09-06 06:47Merge branch 'master' of github.com:anders-dc/sphereAnders Damsgaard12+609-17
2015-09-06 06:46update readmeAnders Damsgaard1+6-0
2015-06-16 07:18fix visualization callAnders Damsgaard1+1-1
2015-06-16 07:09update plotsAnders Damsgaard3+43-36
2015-05-29 13:40finish figure 3Anders Damsgaard2+313-253
2015-05-29 09:29modify script for high N simulationAnders Damsgaard1+124-126
2015-05-29 04:57Removed erroneous character, thanks Eli!Anders Damsgaard1+1-1
2015-05-27 13:42improve combined plotsAnders Damsgaard3+47-32
2015-05-25 14:31add permeable variable shear rate experimentAnders Damsgaard2+99-0
2015-05-25 13:03add script to continue slow simulationsAnders Damsgaard1+49-0
2015-05-25 12:51remove blank line, add slow shear experiments for article2Anders Damsgaard2+51-1
2015-05-21 14:25add particle indexes to forcechain outputAnders Damsgaard3+63-28
2015-05-20 07:31extend wip-varA2 simulationsAnders Damsgaard1+3-3
2015-05-20 07:29update visualization callsAnders Damsgaard1+5-8
2015-05-20 07:27update initGridPos callAnders Damsgaard1+1-1
2015-05-20 07:25update plots, shear test scriptAnders Damsgaard2+9-9
2015-05-18 14:05fix force chain axis limitsAnders Damsgaard1+3-3
2015-05-18 13:43fix matplotlib callAnders Damsgaard1+2-1
2015-05-18 13:38* python/sphere.py: add force chain plotsAnders Damsgaard1+55-9
2015-05-18 12:18add plot of contact anglesAnders Damsgaard2+82-50
2015-05-18 11:17update histogram to log, plot creep snapshots in loopAnders Damsgaard2+139-337
2015-05-18 09:57add histograms to plotContactsAnders Damsgaard2+37-10
2015-05-15 18:35modify plotContacts to optional data output, add creep dynamics plotAnders Damsgaard2+489-6
2015-05-15 11:06Merge branch 'master' of github.com:anders-dc/sphereAnders Damsgaard1+4-5
2015-05-15 11:06add new wip simsAnders Damsgaard2+99-0
2015-05-14 18:13fix xyzsum nameAnders Damsgaard1+1-1
2015-05-14 17:52add spatial scaling functionAnders Damsgaard2+22-1
2015-05-13 11:35remove redundant whitespaceAnders Damsgaard1+3-3
2015-05-13 11:35fix sidsAnders Damsgaard1+3-1
2015-05-12 19:22fix order of matplotlib settingsAnders Damsgaard1+4-3
2015-05-12 19:18fix order of matplotlib cmdsAnders Damsgaard2+8-6
2015-05-12 19:14change default text sizeAnders Damsgaard3+20-21
2015-05-12 16:45add original scriptAnders Damsgaard4+422-13
2015-05-11 08:43extend simulation timeAnders Damsgaard1+3-3
2015-05-11 08:42extend simulation timeAnders Damsgaard3+7-7
2015-05-06 12:52Merge pull request #9 from gitter-badger/gitter-badgeAnders Damsgaard1+6-0
2015-05-06 12:22change order of plotsAnders Damsgaard1+1-1
2015-05-06 12:18add shear strain figure with different shear velocitiesAnders Damsgaard1+204-0
2015-05-06 11:38improve shear strain legend text, fix file namesAnders Damsgaard3+3-3
2015-05-05 19:07add extra simulations with larger A valuesAnders Damsgaard2+99-0
2015-04-28 13:27fix simulation namesAnders Damsgaard2+9-5
2015-04-24 00:03add function for particle surface areaAnders Damsgaard1+12-2
2015-04-23 22:34fix filename syntaxAnders Damsgaard1+1-1
2015-04-23 20:30add figures from simulations with N=80 kPaAnders Damsgaard5+1034-1015
2015-04-23 16:54fix amplitudes, add continue scriptAnders Damsgaard2+52-3
2015-04-23 16:43test different oscillation amplitudesAnders Damsgaard1+50-0
2015-04-17 12:37adjust smoothing plotAnders Damsgaard2+2-2
2015-04-17 12:36don't plot last part of smoothed signalAnders Damsgaard2+2-2
2015-04-16 11:47add missing simulation starter scriptAnders Damsgaard1+87-0
2015-04-16 11:18fox filenamesAnders Damsgaard1+3-3
2015-04-16 11:07improve plotAnders Damsgaard1+29-17
2015-04-16 11:07add shear tests with neumann bc on topAnders Damsgaard2+99-0
2015-04-16 09:48improve internals plotAnders Damsgaard2+207-175
2015-04-16 08:29add colormap parameterAnders Damsgaard2+42-19
2015-04-16 08:05hide filename outputAnders Damsgaard1+0-2
2015-04-16 07:59disable debug outputAnders Damsgaard1+1-1
2015-04-16 07:59add script to batch generate fluid pressure plotsAnders Damsgaard1+33-0
2015-04-16 07:58add figsize parameterAnders Damsgaard1+24-6
2015-04-15 08:47fix wrong permeabilities in continue scriptsAnders Damsgaard2+4-4
2015-04-15 08:32added simulations for N=80kPa, decrease p_f axis limsAnders Damsgaard6+202-3
2015-04-14 19:24abbreviate intermediateAnders Damsgaard1+1-1
2015-04-14 19:21add grid linesAnders Damsgaard1+2-0
2015-04-14 19:11fix file nameAnders Damsgaard1+1-1
2015-04-14 19:01increase smoothing windowAnders Damsgaard1+1-1
2015-04-14 18:58change color of unsmoothed frictionAnders Damsgaard1+3-2
2015-04-14 18:56change color of unsmoothed friction plotAnders Damsgaard1+3-2
2015-04-14 18:54allow the unsmoothed plot to go outside figure axesAnders Damsgaard1+1-1
2015-04-14 18:49use hanning smoothing, widen smoothing windowAnders Damsgaard2+5-9
2015-04-14 18:03improved figureAnders Damsgaard1+460-0
2015-04-14 18:02remove grid linesAnders Damsgaard1+1-1
2015-04-14 17:47improve stress plot w different permeabilitiesAnders Damsgaard1+2-3
2015-04-14 14:10improve fluid plotAnders Damsgaard1+3-3
2015-04-14 14:02improve friction,dilation,pressure vs rate plotAnders Damsgaard1+275-118
2015-04-14 12:59use seaborn to improve figuresAnders Damsgaard2+109-49
2015-04-14 11:04improve shear strain plotAnders Damsgaard2+44-10
2015-04-14 09:34add custom colormapAnders Damsgaard3+76-16
2015-04-13 12:16added script to continue viscosity scaling simulationsAnders Damsgaard1+49-0
2015-04-13 12:11add more simulations with different viscosityAnders Damsgaard2+57-4
2015-04-10 12:05do not categorize contacts between fixed particles as force chainsAnders Damsgaard1+2-1
2015-04-10 11:28fix animation callAnders Damsgaard1+3-1
2015-04-09 14:22disable test dataAnders Damsgaard1+1-2
2015-04-09 14:21fix contact plotAnders Damsgaard1+13-7
2015-04-09 13:47improve plot titleAnders Damsgaard2+14-6
2015-04-09 09:15close figures in order to avoid large memory requirements when loopedAnders Damsgaard1+19-5
2015-04-08 13:39add format cmdAnders Damsgaard1+2-1
2015-04-08 13:31add plotContacts and visualize('contacts')Anders Damsgaard1+125-1
2015-04-08 09:53do not artificially increase porosity at lower boundaryAnders Damsgaard2+21-4
2015-03-31 11:25set porosity ghost nodesAnders Damsgaard1+11-0
2015-03-31 11:22implemented correction for spatial advection of porosityAnders Damsgaard6+99-42
2015-03-24 09:23narrow porosity limitsAnders Damsgaard1+4-2
2015-03-24 08:42remove old end commentAnders Damsgaard1+1-1
2015-03-24 08:41only find porosity in cfd time stepsAnders Damsgaard1+17-5
2015-03-24 08:40use linear porosity estimation methodAnders Damsgaard2+32-24
2015-03-24 08:16revert to porosity change forcing, keep linear interpolated pressure forcesAnders Damsgaard3+58-36
2015-03-23 13:21fix neighbor cell indexesAnders Damsgaard1+31-16
2015-03-23 11:38find porosities before pressure forceAnders Damsgaard3+37-33
2015-03-23 10:10fix particle velocity divergence functionAnders Damsgaard3+80-36
2015-03-20 14:34use local neighbor cell center coordinateAnders Damsgaard2+21-13
2015-03-20 13:12disable diagnostic output, decrease maxiterAnders Damsgaard2+4-5
2015-03-20 13:10disable diagnostic outputAnders Damsgaard1+2-1
2015-03-20 13:10improve formattingAnders Damsgaard1+1-4
2015-03-20 13:09add grid dimensions to registersAnders Damsgaard1+6-3
2015-03-20 12:56do not read gradient values at ghost node grid edges and cornersAnders Damsgaard2+62-28
2015-03-20 10:40change sign on every 2nd valueAnders Damsgaard1+3-3
2015-03-20 10:40decrease factor to be addedAnders Damsgaard1+6-6
2015-03-20 10:32refine testAnders Damsgaard1+2-0
2015-03-20 10:31update fluid interaction testAnders Damsgaard2+6-7
2015-03-20 10:25disable debug informationAnders Damsgaard1+22-4
2015-03-20 09:22various fixesAnders Damsgaard2+9-7
2015-03-20 09:08add pressure gradient arrayAnders Damsgaard3+19-0
2015-03-20 08:33remove old, commented codeAnders Damsgaard1+0-80
2015-03-20 08:32iterate over 27 closest cellsAnders Damsgaard2+189-47
2015-03-19 18:49disable debug outputAnders Damsgaard1+2-2
2015-03-19 18:49avoid division by zeroAnders Damsgaard1+44-97
2015-03-19 15:34small bugfixesAnders Damsgaard1+9-9
2015-03-19 15:32use linear and staggered force interpolation schemeAnders Damsgaard2+133-7
2015-03-19 15:16use particle velocity divergence as forcing termAnders Damsgaard2+26-14
2015-03-19 14:45find particle velocity divergence with porositiesAnders Damsgaard1+293-0
2015-03-19 12:46fix distance calculationAnders Damsgaard1+3-3
2015-03-19 12:21add sphere volume device function and linear weighting functionAnders Damsgaard1+31-4
2015-03-17 11:58add cyclic impermeable experiment, change legend opacityAnders Damsgaard3+100-1
2015-03-12 20:56revert to blues colorschemeAnders Damsgaard1+2-2
2015-03-12 20:55do not plot by defaultAnders Damsgaard2+3-2
2015-03-12 20:50do not plot by defaultAnders Damsgaard2+29-24
2015-03-12 19:25show velocity instead of porosity, read files quietlyAnders Damsgaard1+13-17
2015-03-12 19:04add various displacement typesAnders Damsgaard1+14-2
2015-03-12 14:49add script to continue simulationsAnders Damsgaard1+49-0
2015-03-12 14:46added script for cyclic experiments on grendelAnders Damsgaard2+51-1
2015-03-12 14:31fix velocity limitAnders Damsgaard2+23-8
2015-03-04 09:49remove redundant linesAnders Damsgaard1+0-1
2015-03-03 14:27save stresses as cell data, add firststep argumentAnders Damsgaard2+38-34
2015-03-02 14:06remove trailing zeroAnders Damsgaard1+3-3
2015-03-02 13:22add plot of rate vs. dilationAnders Damsgaard1+57-0
2015-03-02 12:30remove typoAnders Damsgaard1+1-1
2015-03-02 12:29use current value instead of defined normal stressAnders Damsgaard1+4-4
2015-03-02 12:24add plot of inertia parameterAnders Damsgaard1+29-3
2015-03-02 12:15shearVel as alias of shearVelocityAnders Damsgaard3+49-28
2015-02-27 11:20improve readTime functionAnders Damsgaard1+3-3
2015-02-27 10:42added function to read a specified timeAnders Damsgaard2+46-12
2015-02-26 09:35add additional fitAnders Damsgaard1+25-0
2015-02-25 14:44remove temporary underrelaxation scalingAnders Damsgaard1+1-1
2015-02-25 09:50add script to show and fit stress-strain dataAnders Damsgaard1+139-0
2015-02-25 09:38copy file to article graphics folderAnders Damsgaard1+4-1
2015-02-25 09:26add global lienwidth parameterAnders Damsgaard2+11-9
2015-02-24 20:10set label color accordinglyAnders Damsgaard1+7-2
2015-02-24 19:56add scripts for new figuresAnders Damsgaard2+302-0
2015-02-24 12:02refer to correct objectAnders Damsgaard1+1-1
2015-02-24 12:01only use x-axis force componentAnders Damsgaard1+1-1
2015-02-24 10:09add function to return current shear velocityAnders Damsgaard1+18-7
2015-02-24 10:00add function to find cell index of wall 0Anders Damsgaard1+12-0
2015-02-24 09:51improve functionality for determining shear stressesAnders Damsgaard1+19-8
2015-02-24 09:49raise exception if unknown type is specifiedAnders Damsgaard1+2-0
2015-02-24 09:48add option to return either defined or effective normal stressAnders Damsgaard2+32-9
2015-02-23 09:40add force chain statistics scriptAnders Damsgaard1+96-0
2015-02-23 09:04add thin border to dotsAnders Damsgaard1+1-1
2015-02-20 14:50add functions to calculate coordination numbersAnders Damsgaard1+21-0
2015-02-20 13:19add function to visualize particles directly from python moduleAnders Damsgaard1+80-2
2015-02-20 10:54add parameters to docstringAnders Damsgaard1+5-0
2015-02-20 10:47optionally write contact force VTK filesAnders Damsgaard1+10-1
2015-02-20 10:41add function to visualize force chainsAnders Damsgaard1+119-7
2015-02-20 08:08add function to find loaded contactsAnders Damsgaard1+14-0
2015-02-19 13:04fix sign issue in contact area computationAnders Damsgaard1+1-1
2015-02-19 12:48contact area instead of contact radiusAnders Damsgaard1+2-1
2015-02-19 12:46remove redundant newlineAnders Damsgaard1+0-1
2015-02-19 12:45add functions to find contact areas and stressesAnders Damsgaard1+48-1
2015-02-18 10:17remove redundant paranthesesAnders Damsgaard1+210-210
2015-02-18 08:48add function to input/output current simulation timeAnders Damsgaard1+17-0
2015-02-18 08:16remove abundant newlinesAnders Damsgaard1+1-3
2015-02-17 13:44choose better colormap, decrease height of figureAnders Damsgaard1+7-3
2015-02-17 13:29improve shearStrainRate function, use shear strain and -rate in plotAnders Damsgaard1+31-11
2015-02-17 13:24improve shearStrain functionAnders Damsgaard1+19-2
2015-02-17 12:45add colored dots to visualize progressive shear strainAnders Damsgaard1+4-1
2015-02-17 12:06add method to visualize sediment rate dependenceAnders Damsgaard1+36-2
2015-02-17 11:33refer to selfAnders Damsgaard1+1-1
2015-02-17 11:32refer to selfAnders Damsgaard1+2-2
2015-02-16 12:49add timefactor to fluid viscosityAnders Damsgaard1+1-1
2015-02-16 12:21adjust xlimits in plotsAnders Damsgaard2+19-4
2015-02-13 14:05add time factorAnders Damsgaard2+7-4
2015-02-11 14:11switch device and fluid parameter placementAnders Damsgaard3+5-5
2015-02-10 20:46add shading during stick periodsAnders Damsgaard1+11-1
2015-02-10 20:08fix typoAnders Damsgaard1+1-1
2015-02-10 19:59enable gridsAnders Damsgaard1+4-2
2015-02-10 19:58remove xticks on middle plotAnders Damsgaard1+2-0
2015-02-10 19:52refer to correct velocity arrayAnders Damsgaard1+2-2
2015-02-10 19:36add plot with shear velocitiesAnders Damsgaard2+25-9
2015-02-10 07:57add new sim, change appearance of shear visualizationAnders Damsgaard2+9-5
2015-02-09 14:29permeability BC suitable for shear stress experimentsAnders Damsgaard1+4-4
2015-02-09 13:18fix x axis limitsAnders Damsgaard1+4-2
2015-02-09 13:17remove odd multiplicationAnders Damsgaard1+1-1
2015-02-09 13:14add x axis limits to visualize functionAnders Damsgaard1+52-3
2015-02-06 10:22remove debug outputAnders Damsgaard1+0-2
2015-02-06 10:12disable legends in two lower plotsAnders Damsgaard1+8-8
2015-02-06 10:01add script to plot macroscopic properties at different rates (changing mu)Anders Damsgaard1+224-0
2015-02-06 09:46increase width of energy plotsAnders Damsgaard1+1-0
2015-02-04 15:03extend dirichlet BC one cell further down from top wallAnders Damsgaard1+4-2
2015-02-02 14:02return as scalarAnders Damsgaard1+1-1
2015-02-02 14:02return resultAnders Damsgaard1+1-0
2015-02-02 14:02improve permeability estimation functionAnders Damsgaard1+10-5
2015-02-02 13:57return and store valuesAnders Damsgaard1+4-3
2015-01-31 09:27add transparancy to shear-displacement plot legendAnders Damsgaard1+6-2
2015-01-31 09:22change color of shear stressAnders Damsgaard1+2-2
2015-01-31 09:20plot sigma0, fix currentNormalStress functionAnders Damsgaard1+5-3
2015-01-31 09:09add fluid forcing to plotAnders Damsgaard1+8-2
2015-01-30 10:41improved color bar rangeAnders Damsgaard1+7-0
2015-01-30 10:25add visualization method for porositiesAnders Damsgaard1+59-1
2015-01-28 13:48rename color to Type color in order to use Diameter as default scalarAnders Damsgaard1+4-4
2015-01-27 12:38added optional dump of figure to pickleAnders Damsgaard1+12-3
2015-01-27 12:25read correct objectsAnders Damsgaard1+2-2
2015-01-27 11:11refer to previously read objectAnders Damsgaard1+3-3
2015-01-27 10:50improve plot layoutAnders Damsgaard1+1-0
2015-01-27 10:19check wmode in sb objectAnders Damsgaard1+2-2
2015-01-27 08:29fluid modulation 180 phase shiftedAnders Damsgaard1+3-1
2015-01-27 08:04phase shift is in radiansAnders Damsgaard1+1-1
2015-01-23 10:46fix x axis limitsAnders Damsgaard1+1-2
2015-01-23 10:09refer to correct parameterAnders Damsgaard1+1-1
2015-01-23 09:24read modulation from current object instead of selfAnders Damsgaard1+2-7
2015-01-23 08:44update label conditionalAnders Damsgaard1+1-1
2015-01-23 08:43use time as x axis if experiment is stress-controlledAnders Damsgaard1+10-4
2015-01-23 08:31rearrange profiling callAnders Damsgaard1+5-4
2015-01-23 08:30determine initial fluid pressure at start, minimize porosity estimationAnders Damsgaard2+39-61
2015-01-22 14:12allow propagation of top wall fluid pressures downwardsAnders Damsgaard1+2-2
2015-01-22 11:37use a single legendAnders Damsgaard1+10-6
2015-01-22 09:34close figures after plottingAnders Damsgaard1+5-3
2015-01-22 09:30change line stylesAnders Damsgaard1+3-3
2015-01-22 09:16add missing }Anders Damsgaard2+11-10
2015-01-22 09:03remove commented linesAnders Damsgaard1+0-2
2015-01-22 09:00move dp=0 one iz upwards, may change previous resultsAnders Damsgaard1+4-2
2015-01-22 08:44return as scalarAnders Damsgaard1+2-1
2015-01-22 08:42different plot when normal stress is modulatedAnders Damsgaard1+26-15
2015-01-21 11:41improve plot geometryAnders Damsgaard1+1-0
2015-01-21 11:40show pressure in PascalAnders Damsgaard1+4-4
2015-01-21 11:39add base value to plot. call modulation function after initTemporalAnders Damsgaard2+2-2
2015-01-21 10:40assign values to correct variablesAnders Damsgaard1+2-2
2015-01-21 10:39added script for simulations with modulating stressesAnders Damsgaard1+93-0
2015-01-20 10:51add grid by defaultAnders Damsgaard1+1-0
2015-01-20 10:51add plot style parameterAnders Damsgaard1+7-2
2015-01-20 10:48specify parameter typeAnders Damsgaard1+2-2
2015-01-20 10:44plot pressure values in kPaAnders Damsgaard1+4-4
2015-01-20 10:41add baseval value and close plotAnders Damsgaard1+5-3
2015-01-20 09:59add plot parameterAnders Damsgaard1+3-1
2015-01-20 09:38add function to plot modulationAnders Damsgaard1+46-2
2015-01-20 08:37add cross references in docstringsAnders Damsgaard1+4-2
2015-01-20 08:36add functions for setting sigma0 fluctuationsAnders Damsgaard1+24-0
2015-01-19 10:29change second line color to blueAnders Damsgaard1+4-2
2015-01-19 10:27color y axis ticksAnders Damsgaard1+2-2
2015-01-19 10:26fix line and axis colorsAnders Damsgaard1+13-4
2015-01-19 10:20print filename when saving figure in visualize()Anders Damsgaard1+3-1
2015-01-19 09:10fix indentationAnders Damsgaard1+7-7
2015-01-19 09:10added function to modulate fluid pressure at top wallAnders Damsgaard1+13-2
2015-01-19 08:58fix typoAnders Damsgaard1+1-1
2015-01-19 08:57add dirichlet BC fix for top wall for darcy solverAnders Damsgaard1+2-1
2015-01-19 08:55fix dirichlet bc at dynamic top wallAnders Damsgaard2+2-2
2015-01-19 08:41top wall bc set by wmode not bc_topAnders Damsgaard3+5-4
2015-01-19 08:31enforce dirichlet pressure BC when bc_top == 3Anders Damsgaard3+6-6
2015-01-16 13:41remove grid for shared x-axisAnders Damsgaard2+2-3
2015-01-15 14:58add scripts to continue simulations after walltime limitAnders Damsgaard3+147-0
2015-01-15 14:50add scripts to run shear stress experimentsAnders Damsgaard4+237-0
2015-01-15 12:48modify line colorsAnders Damsgaard1+1-1
2015-01-15 12:47fix fluid pressure plottingAnders Damsgaard1+1-1
2015-01-15 09:51Add method to visualize shear-displacement over timeAnders Damsgaard1+139-2
2015-01-14 14:15describe shear stress boundary conditionAnders Damsgaard1+3-0
2015-01-14 14:06modulate fluid pressure at top wallAnders Damsgaard2+7-4
2015-01-14 14:00expand shear() to setup stress-controlled shear experimentsAnders Damsgaard1+16-7
2015-01-14 13:53add else clause for old filesAnders Damsgaard1+2-0
2015-01-14 13:18topyAnders Damsgaard1+2-3
2015-01-14 13:17add conference presentationsAnders Damsgaard1+25-1
2015-01-14 13:05add note on particles who are not part of the fixed top wallAnders Damsgaard1+2-0
2015-01-14 12:57fix syntaxAnders Damsgaard1+6-6
2015-01-14 12:54implement shear stress BCAnders Damsgaard3+54-12
2015-01-14 12:39incorporate shear stress BC in integrate functionAnders Damsgaard1+31-2
2015-01-14 12:22reformulate commentAnders Damsgaard1+1-1
2015-01-14 12:21renamed tau_eff to tau_eff_x to reflect scalar valueAnders Damsgaard3+41-1
2015-01-14 11:22rename wall shear stress from tau to tau_xAnders Damsgaard5+17-11
2015-01-14 09:04add linear array of wall shear stressesAnders Damsgaard2+5-2
2015-01-14 09:00add wall shear stress parameterAnders Damsgaard1+9-0
2015-01-14 08:44version no in separate file, rename devs to sigma0Anders Damsgaard6+17-12
2015-01-14 08:38rename devs to sigma0Anders Damsgaard9+45-42
2015-01-13 08:27add a few filesAnders Damsgaard1+6-0
2015-01-12 12:36noflow BC at dynamic top wall if bc_top == 1Anders Damsgaard2+37-0
2015-01-12 12:35improve plot appearanceAnders Damsgaard1+21-14
2015-01-09 14:08change default color mapAnders Damsgaard1+2-2
2015-01-09 14:06improve 'fluid-pressure' visualizationAnders Damsgaard1+8-1
2015-01-09 13:37improve 'fluid-pressure' visualization routineAnders Damsgaard1+8-7
2015-01-09 12:56do not raise exception if radii can be read from fileAnders Damsgaard1+5-3
2015-01-09 12:51read first input file if no information is presentAnders Damsgaard1+6-4
2015-01-08 13:34add fluid pressure plotting functionsAnders Damsgaard1+45-2
2015-01-07 12:35disable Dirichlet at top wallAnders Damsgaard1+2-2
2015-01-07 12:31fix ghost node setAnders Damsgaard1+3-25
2015-01-07 10:42fix non-Dirichlet BC solutionAnders Damsgaard1+8-8
2015-01-07 10:39Use custom ranges for simulations, change to linux pathAnders Damsgaard1+11-5
2015-01-06 11:27Merge branch 'master' of github.com:anders-dc/sphereAnders Damsgaard1+23-18
2015-01-06 11:27update script to visualize internal valuesAnders Damsgaard1+217-0
2014-12-28 17:26added experimental fft analysisAnders Damsgaard1+141-0
2014-12-22 14:08update paths to osxAnders Damsgaard1+1-1
2014-12-22 14:04change legend textAnders Damsgaard1+161-0
2014-12-02 08:50add units to particle vtk filesAnders Damsgaard1+22-18
2014-11-27 19:47reenable shearing motionAnders Damsgaard1+2-2
2014-11-27 09:24extend dirichlet BC to one cell beneath wall0_izAnders Damsgaard1+3-3
2014-11-27 08:36extend top BC in pressure force one cell downwardsAnders Damsgaard2+3-2
2014-11-26 13:55remove neumann BC at top wallAnders Damsgaard2+5-4
2014-11-26 10:37fix conditional statementAnders Damsgaard1+1-1
2014-11-26 10:34disregard backward euler estimate in first iterationAnders Damsgaard1+6-4
2014-11-26 10:31use central differences for porosity changeAnders Damsgaard2+32-25
2014-11-26 08:41approximate porosity change by forward Euler methodAnders Damsgaard1+33-81
2014-11-24 13:52dphi should be 0 in first iterationAnders Damsgaard1+5-4
2014-11-24 13:44add docstring on verbose flagAnders Damsgaard1+4-0
2014-11-24 13:43revert to old limits for phi, add verbose flag to permeability prefactor functionAnders Damsgaard2+15-13
2014-11-24 13:39new phi boundariesAnders Damsgaard2+2-0
2014-11-24 13:36disable output in porosity calculationsAnders Damsgaard1+2-2
2014-11-24 13:35set dphi after div_v_pAnders Damsgaard1+6-6
2014-11-24 13:30fix periodic boundaries when determining div_v_p, add permeability definition in second testAnders Damsgaard3+49-7
2014-11-24 11:01fix sign error in velocity divergence termAnders Damsgaard2+35-10
2014-11-20 10:43use particle velocity divergence as fluid forcing term, remove porosity from interaction force on particleAnders Damsgaard3+115-45
2014-11-19 12:54change pressure force to fit with Navier Stokes implementationsAnders Damsgaard1+3-1
2014-11-19 11:18use fluid density from cpu structAnders Damsgaard2+3-1
2014-11-19 11:17add bouyancy to particles in darcy solverAnders Damsgaard3+9-8
2014-11-18 09:35extend f_p.z=0 one cell downwardsAnders Damsgaard1+1-1
2014-11-17 10:26added scripts to resume simulationsAnders Damsgaard3+147-0
2014-11-17 10:15add missing pressure readAnders Damsgaard1+1-1
2014-11-17 10:14refine top fluid gradient bcAnders Damsgaard1+2-2
2014-11-17 10:12add scripts to perform shear experiments with different permeabilities and velocitiesAnders Damsgaard3+150-0
2014-11-17 09:47add velocity scaling factorAnders Damsgaard1+7-5
2014-11-17 09:29disable unused readAnders Damsgaard1+1-1
2014-11-17 09:28disable vertical pressure forces at the top wallAnders Damsgaard1+7-3
2014-11-13 11:44extend neumann bc condition in pressure forceAnders Damsgaard1+1-1
2014-11-13 08:10use forward differnce for pressure gradient forceAnders Damsgaard1+3-2
2014-11-13 08:07update pressure definition to 1st order central differenceAnders Damsgaard1+2-2
2014-11-13 08:06update call to findDarcyPressureForceAnders Damsgaard1+13-13
2014-11-13 08:05add Neumann BC at top wallAnders Damsgaard1+6-1
2014-11-13 08:03add Neumann BC at top wallAnders Damsgaard1+3-3
2014-11-12 19:59add publication listAnders Damsgaard1+10-0
2014-11-12 13:21optimize damping output and K and k infoAnders Damsgaard1+9-11
2014-11-12 13:17fix typoAnders Damsgaard1+1-1
2014-11-12 13:16display values at a porosity of 0.3Anders Damsgaard1+4-0
2014-11-12 13:03fix IO of dphi valuesAnders Damsgaard2+4-3
2014-11-12 12:28se built-in dtype argument instead of post-read conversionAnders Damsgaard1+2-2
2014-11-12 10:48fix reference to gravityAnders Damsgaard1+1-1
2014-11-12 10:47write hydraulic conductivities to VTK filesAnders Damsgaard1+28-0
2014-11-12 10:33use more convenient type conversion functionAnders Damsgaard1+2-3
2014-11-12 10:31convergence data as integersAnders Damsgaard1+3-1
2014-11-12 10:28add functions to read convergence evolution, add shearing motionAnders Damsgaard2+16-4
2014-11-12 09:52use crank-nicolson scheme as defaultAnders Damsgaard1+3-3
2014-11-12 09:09add dp_expl to debug outputAnders Damsgaard1+3-1
2014-11-12 09:04adjustable integration method, implicit defaultAnders Damsgaard3+207-13
2014-11-10 15:14quiet runAnders Damsgaard1+2-2
2014-11-10 15:13improve dirichlet formulationAnders Damsgaard1+13-23
2014-11-10 14:28debugging darcy tests, improve solution procedureAnders Damsgaard2+51-45
2014-11-10 12:32udpate to new default pressureAnders Damsgaard1+6-6
2014-11-10 12:27update for default values, quiet runAnders Damsgaard1+3-4
2014-11-10 12:25update to default pressure valueAnders Damsgaard1+2-2
2014-11-10 11:56update pressure conservation test to new default pressure valueAnders Damsgaard1+2-2
2014-11-10 11:51add test title outputAnders Damsgaard1+4-0
2014-11-10 11:49disable vtk output, avoid divide by zero when determining ReAnders Damsgaard2+5-4
2014-11-10 11:47avoid divide by zero in inviscid fluidAnders Damsgaard2+4-4
2014-11-10 09:40fluid pressure zero by defaultAnders Damsgaard1+1-1
2014-11-10 09:38write vtk files, only show info output if run is verboseAnders Damsgaard2+3-1
2014-11-10 09:15add pressure perturbation test, do not write Info msg to stderrAnders Damsgaard2+44-6
2014-11-10 09:03few grammar editsAnders Damsgaard1+2-2
2014-11-09 20:14Merge branch 'master' of github.com:anders-dc/sphereAnders Damsgaard4+25-0
2014-11-09 20:13disable debug output, add experimental underrelaxationAnders Damsgaard2+11-0
2014-11-09 09:55update pressure update debug outputAnders Damsgaard1+9-10
2014-11-07 13:00only set dphi if relevantAnders Damsgaard1+8-5
2014-11-07 12:54make sure dphi values are saved in output filesAnders Damsgaard1+16-6
2014-11-07 12:08decrease porosity control volume radius for speedupAnders Damsgaard1+8-8
2014-11-07 12:02add missing <Anders Damsgaard1+1-1
2014-11-07 11:57fix indentation errorsAnders Damsgaard1+100-84
2014-11-07 11:41disable fixvel, example not functionalAnders Damsgaard1+2-2
2014-11-07 10:38set ndem to 1 for fluidization testsAnders Damsgaard1+1-0
2014-11-07 10:35add functions for setting fluid parametersAnders Damsgaard2+85-9
2014-11-07 08:44use correct ndem value, add ndem testAnders Damsgaard2+25-1
2014-11-06 14:45implemented ndem functionality into Darcy solver, not tested when ndem!=1Anders Damsgaard3+242-214
2014-11-06 13:43adjust max. permeability value accordinglyAnders Damsgaard1+1-1
2014-11-06 13:43fix error in max permeability valueAnders Damsgaard1+3-1
2014-11-06 12:58debugging stability issuesAnders Damsgaard2+2-0
2014-11-06 12:17check CFL criteria onlyAnders Damsgaard1+2-2
2014-11-06 12:17use the courant criteria when determining the fluid time stepAnders Damsgaard1+28-20
2014-11-06 11:50fix fluid time step, add shearAnders Damsgaard2+4-2
2014-11-06 11:47improve time step selection logicAnders Damsgaard1+7-6
2014-11-06 11:36add advection stability checkAnders Damsgaard3+44-7
2014-11-06 10:15use hardcoded limits for fluid time stepAnders Damsgaard2+7-4
2014-11-06 09:59adjust porosity range to better estimate realistic time stepAnders Damsgaard1+1-1
2014-11-06 09:54start error with newline, debug shear experimentAnders Damsgaard2+5-3
2014-11-06 09:49fix fluid solver valueAnders Damsgaard1+1-1
2014-11-06 09:48report fluid solver choiceAnders Damsgaard2+14-1
2014-11-06 09:15improve time step computing functionalityAnders Damsgaard2+14-32
2014-11-06 09:02add functions to set frictional coefficientsAnders Damsgaard2+39-3
2014-11-05 18:39include dynamic wall testAnders Damsgaard1+22-0
2014-11-05 14:42fix porosity calculation issuesAnders Damsgaard2+23-16
2014-11-05 14:37fix calls to generateRadiiAnders Damsgaard2+3-3
2014-11-05 14:36add note on fluid simulationAnders Damsgaard1+3-1
2014-11-05 14:31fix markdownAnders Damsgaard1+2-2
2014-11-05 14:29do not write vtk files and cleanup file IO aftwardsAnders Damsgaard1+2-3
2014-11-05 14:27add note on Darcy solver initializationAnders Damsgaard1+4-0
2014-11-05 14:25Merge pull request #8 from anders-dc/darcyAnders Damsgaard34+3926-1042
2014-10-28 08:35remove `c_a` parameter and reuse the slot for `dt_dem_fac`Anders Damsgaard12+119-117
2014-10-27 10:43fix legendAnders Damsgaard1+1-1
2014-10-27 10:33fix gridAnders Damsgaard1+1-1
2014-10-27 10:31do not label irrelevant axisAnders Damsgaard1+2-1
2014-10-27 10:20improve labels and plotting sequenceAnders Damsgaard1+5-5
2014-10-27 10:19correct output file nameAnders Damsgaard1+16-8
2014-10-27 10:14only plot zflow if fluid=TrueAnders Damsgaard1+1-1
2014-10-27 10:13avoid division by zeroAnders Damsgaard1+2-1
2014-10-27 10:09added script to investigate rate dependenceAnders Damsgaard2+278-3
2014-10-24 13:50change to set 2Anders Damsgaard1+2-2
2014-10-24 11:51add scripts with different velocity scaling valuesAnders Damsgaard2+100-0
2014-10-24 11:44add starter scripts with new fluid scaling parametersAnders Damsgaard3+59-6
2014-10-24 11:06update halfshear starter script to new fluid parametersAnders Damsgaard1+7-8
2014-10-24 09:58rename test with zero advection and velocity scalingAnders Damsgaard3+82-82
2014-10-24 09:48update equations for c_v and c_aAnders Damsgaard2+46-74
2014-10-23 09:59correct run callsAnders Damsgaard1+3-3
2014-10-23 09:56use default deviceAnders Damsgaard1+78-0
2014-10-23 09:52c_grad_p replaced by velocity scaling term c_v and advection scaling term c_aAnders Damsgaard6+68-66
2014-10-22 13:36long neumann testAnders Damsgaard1+2-2
2014-10-22 13:33disable epsilon outputAnders Damsgaard1+1-1
2014-10-22 12:20disable cfd debug outputAnders Damsgaard1+5-5
2014-10-22 12:19set velocity BCs on predicted values as wellAnders Damsgaard4+31-10
2014-10-22 09:47modify debug outputAnders Damsgaard3+13-11
2014-10-22 09:06output old velocitiesAnders Damsgaard1+2-0
2014-10-22 08:35correct velocity gradient at bottom neumann BC in staggered grid, show v_p for all cellsAnders Damsgaard2+21-21
2014-10-21 13:46add units to VTK array namesAnders Damsgaard1+5-5
2014-10-21 13:34set ghost nodes in epsilon no matter if smoothing is performedAnders Damsgaard3+15-13
2014-10-21 12:28debugging neumann testAnders Damsgaard5+90-11
2014-10-21 07:26fix debug output conditional statementAnders Damsgaard1+1-1
2014-10-21 07:25enabled debug output of corrector termAnders Damsgaard4+17-6
2014-10-20 14:10decrease v_f_z tolerance, shorten test w/o gravity, use SET_1Anders Damsgaard2+5-4
2014-10-20 13:24updated SET_2 equationsAnders Damsgaard1+10-8
2014-10-20 11:29improve plots, remove stray tabsAnders Damsgaard3+48-37
2014-10-17 08:09updated plotsAnders Damsgaard3+42-24
2014-10-17 08:09added scripts to continue velocity factor simulationsAnders Damsgaard3+147-0
2014-10-14 12:28added wet velocity factor experimentsAnders Damsgaard2+100-0
2014-10-14 12:16fix argumentsAnders Damsgaard1+3-3
2014-10-14 11:55add torque script for dry velocity factor experimentsAnders Damsgaard1+50-0
2014-10-14 11:50add script to launch halfshear exp with variable shear velocityAnders Damsgaard1+73-0
2014-10-14 11:50reselect outputAnders Damsgaard1+6-6
2014-10-14 11:49fix vtk filesAnders Damsgaard1+8-5
2014-10-14 11:49do not overwrite 00000 output file if it isn't the first iterationAnders Damsgaard1+4-2
2014-10-14 09:23fix reynolds number calculation, add Re number to vtk filesAnders Damsgaard1+17-2
2014-10-13 09:25improve pressure time series plotsAnders Damsgaard1+21-14
2014-10-13 08:42add results from c=0.01Anders Damsgaard2+8-5
2014-10-13 07:31optimize runtime by disabling of unwanted tasksAnders Damsgaard1+59-42
2014-10-12 17:50update ns solver equationsAnders Damsgaard1+13-6
2014-10-12 14:55do not run tests with c=0.1Anders Damsgaard1+2-2
2014-10-12 14:35c_grad_p fixes, do not specify device, add c=0.1 neumann testAnders Damsgaard3+16-13
2014-10-12 14:11revised velocity prediction, velocity correction and forcing functionAnders Damsgaard2+65-12
2014-10-10 08:15use reformulated forcing function, remove c_grad_p from pressure gradient forceAnders Damsgaard2+12-7
2014-10-09 13:35add c_grad_p to forcing functionAnders Damsgaard5+22-16
2014-10-08 10:18add script to analyze peak and ultimate shear friction valuesAnders Damsgaard1+41-0
2014-10-08 09:59improve plots, relabel from ultimate to peak shear strengthAnders Damsgaard6+140-83
2014-10-07 14:16add c value to labelAnders Damsgaard1+4-2
2014-10-07 14:14newline in annotationAnders Damsgaard1+2-2
2014-10-07 14:12fix annotationAnders Damsgaard1+1-1
2014-10-07 14:02annotate stateAnders Damsgaard1+8-3
2014-10-07 13:53improve plotsAnders Damsgaard2+44-23
2014-10-07 12:33improved plotsAnders Damsgaard3+443-23
2014-10-06 12:53add new plotAnders Damsgaard2+150-2
2014-10-06 11:22scale pressure gradient force with c_grad_p. improved plotsAnders Damsgaard6+45-29
2014-10-03 13:45add annotations to pressures, improve plotsAnders Damsgaard3+41-16
2014-10-02 19:30remove redundant newlineAnders Damsgaard1+0-1
2014-10-02 19:27do not intialize cuda and check values for contact listing. Improve plotAnders Damsgaard2+8-4
2014-10-02 18:14improved plotAnders Damsgaard1+3-2
2014-10-02 18:05improve plot appearanceAnders Damsgaard1+4-3
2014-10-02 17:54improve plotsAnders Damsgaard2+27-12
2014-10-02 11:54added script to start shear2 simulationsAnders Damsgaard1+74-0
2014-10-02 11:52apply normal stress, do not create visualization image if method isn't understoodAnders Damsgaard3+53-32
2014-10-01 11:13add dry and wet functionsAnders Damsgaard2+51-13
2014-10-01 10:39visualize mean pressures as time series (incomplete)Anders Damsgaard1+76-0
2014-10-01 08:00improved plotsAnders Damsgaard2+44-10
2014-09-30 13:12small fixes, findOverlaps worksAnders Damsgaard2+4-2
2014-09-30 13:07added findOverlaps in sphere.py (untested), do not run sim when testing for contactsAnders Damsgaard2+13-33
2014-09-30 12:51add functionality to list inter-particle contactsAnders Damsgaard3+29-1
2014-09-30 12:35use more appropriate truth comparisonsAnders Damsgaard1+36-36
2014-09-30 12:32only remove fluid parameters in wet simulationsAnders Damsgaard2+7-5
2014-09-30 08:04print critical damping valueAnders Damsgaard2+12-5
2014-09-30 07:41add warning system to avoid over-dampeningAnders Damsgaard1+20-4
2014-09-30 07:02still improving plot, added starter for half the particle assemblageAnders Damsgaard2+81-9
2014-09-25 08:52better approximate the actual steady-state pressure distribution when theres a dynamic top wallAnders Damsgaard1+19-4
2014-09-25 07:52allow selection of several particles in iAnders Damsgaard1+19-4
2014-09-24 11:47fix range in shear plot, improve fc plots, small corrections to shear2 experimentAnders Damsgaard3+14-12
2014-09-24 08:55plot force chains in a time seriesAnders Damsgaard1+22-0
2014-09-24 08:31use lighter grayAnders Damsgaard1+2-2
2014-09-24 08:28add parameter to scale line thicknessesAnders Damsgaard1+3-1
2014-09-24 08:25correct white colorAnders Damsgaard1+1-1
2014-09-24 08:18colorscale white to blackAnders Damsgaard1+3-0
2014-09-24 08:15use BW colorscale for force chain visualizationAnders Damsgaard1+7-1
2014-09-24 08:09read noshear file as input when c_grad_p = 0.1 and sigma0=20e3Anders Damsgaard2+9-5
2014-09-23 14:18forcechains function in pure python abandoned due to slow run timeAnders Damsgaard1+6-24
2014-09-23 13:43implementing forcechains2d plot in sphere.pyAnders Damsgaard5+71-8
2014-09-22 19:26fix self referenceAnders Damsgaard1+1-1
2014-09-22 13:10set velocity to zero above dynamic wallAnders Damsgaard2+6-0
2014-09-19 13:44old formulation of wall stressAnders Damsgaard2+3-3
2014-09-19 13:32corrected BCs at top wallAnders Damsgaard2+19-8
2014-09-19 12:57remove dp_dz outputAnders Damsgaard1+1-1
2014-09-19 12:56remove p debug outputAnders Damsgaard1+0-1
2014-09-19 12:55added Dirichlet and Neumann BC at the dynamic top wallAnders Damsgaard3+22-67
2014-09-19 09:33remove commentAnders Damsgaard1+0-1
2014-09-19 09:19set wall devs value in consolidate functionAnders Damsgaard1+2-2
2014-09-19 09:19add pressure set in jacobi loopAnders Damsgaard1+13-0
2014-09-19 09:16devs should still be set, add function to set pressure at top wallAnders Damsgaard5+70-10
2014-09-16 07:31added relatively light-weight shear experiment as an alternativeAnders Damsgaard3+48-0
2014-09-16 07:27set default value of frictional coefficients to 0.5Anders Damsgaard1+2-2
2014-09-16 07:22add function to set simulation idAnders Damsgaard1+10-0
2014-09-16 07:19run consolidation with heavy wall instead of a normal stress valueAnders Damsgaard1+6-1
2014-09-16 07:16use output with heavy wallAnders Damsgaard1+2-2
2014-09-15 13:02increase wall mass instead of applying normal stressAnders Damsgaard4+40-6
2014-09-12 10:38add reynolds number functionAnders Damsgaard5+71-19
2014-09-11 12:24fancy legends, fix consolidation plotAnders Damsgaard3+29-19
2014-09-11 10:41improve plot appearance, fix max pressureAnders Damsgaard3+35-24
2014-09-10 08:18plotting of several steps works, shear strain text misalignedAnders Damsgaard1+50-41
2014-09-10 07:30take a single step, define as input argAnders Damsgaard1+6-5
2014-09-09 13:40improved plots with means and porositiesAnders Damsgaard1+48-8
2014-09-09 13:11add latex labelsAnders Damsgaard2+24-8
2014-09-09 12:47improve plotAnders Damsgaard1+9-5
2014-09-09 12:42add script to plot shear zone internalsAnders Damsgaard2+108-1
2014-09-09 11:31add min, mean and max pressures to shear strain plotAnders Damsgaard1+38-8
2014-09-09 11:16increase simulation time to 20 sAnders Damsgaard1+1-1
2014-09-09 08:34dilation values already normalized in sphere.pyAnders Damsgaard1+2-3
2014-09-09 08:31reenable gridAnders Damsgaard3+4-4
2014-09-09 08:29disable gridAnders Damsgaard3+5-5
2014-09-09 08:27dimensionless dilation in dry resultsAnders Damsgaard1+1-1
2014-09-09 08:24ignore first set of valuesAnders Damsgaard1+3-2
2014-09-09 08:22dimensionless dilationAnders Damsgaard1+4-2
2014-09-09 07:42adjust grid size before initializing fluidAnders Damsgaard1+2-2
2014-09-09 07:23remove invalid argAnders Damsgaard1+1-1
2014-09-09 07:20adjust grid height properlyAnders Damsgaard1+3-5
2014-09-09 07:09increase grid heightAnders Damsgaard1+5-1
2014-09-09 07:06add script showing shear stress and dilation resultsAnders Damsgaard1+93-0
2014-09-09 07:05set legend font sizeAnders Damsgaard2+3-3
2014-09-08 08:27several bugfixes in shear visualizationAnders Damsgaard1+3-3
2014-09-08 07:40remove compressed fileAnders Damsgaard1+1-1
2014-09-08 07:39remove old diagnostics file if it existsAnders Damsgaard1+1-0
2014-09-05 09:59save values from shear visualization in objectAnders Damsgaard1+21-18
2014-09-05 09:39added wet shear scriptsAnders Damsgaard2+98-0
2014-09-05 08:52added script to continue dry shear experimentAnders Damsgaard1+49-0
2014-09-05 08:16added script to continue simulation where it left offAnders Damsgaard1+49-0
2014-09-04 13:50copy plots to article folderAnders Damsgaard3+14-6
2014-09-04 11:45fix axis selection for disabling numeric offsetAnders Damsgaard1+1-1
2014-09-04 11:42improve diffusivity plot, time in continue sim additional lengthAnders Damsgaard2+19-14
2014-09-04 10:37finalize plotting routineAnders Damsgaard1+33-17
2014-09-04 10:37save mean porosity valueAnders Damsgaard1+1-0
2014-09-04 10:35added script to continue simulations where they endedAnders Damsgaard1+22-0
2014-09-03 07:56added job script generating function for Penguin ComputingAnders Damsgaard1+66-0
2014-09-02 12:30add lo_visc to sidAnders Damsgaard1+1-1
2014-09-02 12:29decrease viscosity consistent with scaling factorAnders Damsgaard2+2-2
2014-09-02 12:28decrease viscosityAnders Damsgaard2+6-2
2014-09-02 07:21do not call plotEvolutionAnders Damsgaard1+1-1
2014-09-02 07:08increased frictional coefficientAnders Damsgaard1+1-1
2014-09-02 07:07increased frictional coefficientsAnders Damsgaard4+5-3
2014-09-01 14:20fix function refsAnders Damsgaard4+6-6
2014-09-01 14:19fix function referencesAnders Damsgaard4+16-16
2014-09-01 14:12fix peak strength textAnders Damsgaard1+1-1
2014-09-01 14:07altered appearance of shear plotAnders Damsgaard1+10-6
2014-09-01 12:56set sigma0Anders Damsgaard1+1-0
2014-09-01 12:50fix typo in function nameAnders Damsgaard6+27-27
2014-09-01 12:45updated documentationAnders Damsgaard6+135-14
2014-09-01 12:44added shearStrainRate and inertiaParameterPlanarShear functionsAnders Damsgaard1+28-0
2014-09-01 12:22set sid according to fluid presenceAnders Damsgaard1+6-2
2014-09-01 11:50fix typoAnders Damsgaard1+1-1
2014-09-01 11:47use input files with short sidAnders Damsgaard1+3-1
2014-09-01 11:45added shear testsAnders Damsgaard3+150-0
2014-09-01 11:40plot evolution, improve shear starterAnders Damsgaard2+14-6
2014-09-01 11:24visual formattingAnders Damsgaard1+2-3
2014-09-01 11:24ignore results with c=0.01 that are influenced by grid geometryAnders Damsgaard1+6-6
2014-09-01 11:21added capillary model from Richefeu 2008, untested, unusedAnders Damsgaard2+35-1
2014-09-01 11:21use results from tall experimentsAnders Damsgaard1+7-5
2014-09-01 10:45fix dimensions, add missing initTemporal callAnders Damsgaard1+30-10
2014-09-01 09:29fix object nameAnders Damsgaard1+1-1
2014-09-01 09:27initialize gridAnders Damsgaard1+4-0
2014-09-01 09:21flip grid indexingAnders Damsgaard1+2-2
2014-09-01 09:03translate particlesAnders Damsgaard1+1-0
2014-09-01 09:02fix typoAnders Damsgaard1+1-1
2014-09-01 08:57add scalingAnders Damsgaard1+22-13
2014-09-01 08:47only add fluid force vectors if fluid=trueAnders Damsgaard1+5-4
2014-09-01 08:44added alternative script to test capillary cohesionAnders Damsgaard2+119-0
2014-09-01 08:43fix deviceAnders Damsgaard1+1-1
2014-09-01 07:09run gravity-free simulation on starting gridAnders Damsgaard1+22-26
2014-09-01 06:56uniform psdAnders Damsgaard1+1-1
2014-08-29 13:24append nograv if gravity == 0Anders Damsgaard1+1-0
2014-08-29 13:23add gravity flagAnders Damsgaard2+17-3
2014-08-29 13:09rename sid during collapseAnders Damsgaard1+22-2
2014-08-29 13:01added script for simulating capillary cohesionAnders Damsgaard2+73-0
2014-08-29 11:52change c valuesAnders Damsgaard1+4-4
2014-08-29 11:51-tall as job name suffixAnders Damsgaard2+2-2
2014-08-29 11:50increase height of fluid gridAnders Damsgaard1+3-1
2014-08-29 11:47add output when sim isn't found, increase height of fluid grid in diffusivity experimentsAnders Damsgaard2+7-1
2014-08-29 08:44add disclaimer on GPU platformAnders Damsgaard1+4-0
2014-08-29 08:42move legend, add permeability results when c=1Anders Damsgaard2+10-6
2014-08-27 10:48read from 5kPa simulation with identical c_grad_p valueAnders Damsgaard1+1-1
2014-08-27 10:42reset fluid to hydrostatic pressure distributionAnders Damsgaard1+1-1
2014-08-27 09:10just modify w_devs value and leave rest unchangedAnders Damsgaard1+2-1
2014-08-27 09:09do not adjust upper wallAnders Damsgaard1+1-1
2014-08-27 09:08disable fluid initializationAnders Damsgaard1+6-6
2014-08-27 09:06improve plotAnders Damsgaard1+3-0
2014-08-27 08:28disable normalization while simulations aren't doneAnders Damsgaard1+10-9
2014-08-27 08:18increase total time to 10sAnders Damsgaard1+1-1
2014-08-27 08:16plot results for all c valuesAnders Damsgaard1+42-40
2014-08-27 08:12add scripts for consolidation curve plotAnders Damsgaard2+99-0
2014-08-27 08:04normalize the thickness changeAnders Damsgaard1+9-2
2014-08-27 07:50scripts to interpret permeability and diffusivity experimentsAnders Damsgaard3+66-18
2014-08-26 14:01add gcc --versionAnders Damsgaard1+1-0
2014-08-26 13:33disable epsilon outputAnders Damsgaard1+2-2
2014-08-26 13:32do not calculate all velocity components at the outer grid edgesAnders Damsgaard2+26-7
2014-08-26 11:42reorganize synchronization pointsAnders Damsgaard1+1-1
2014-08-26 11:08add comment, upgrade constant floating point values to double precisionAnders Damsgaard1+8-6
2014-08-26 08:50compress output fileAnders Damsgaard1+2-1
2014-08-26 08:45add attachment infoAnders Damsgaard1+2-1
2014-08-26 08:41slight change of outputAnders Damsgaard1+1-1
2014-08-26 08:32modify report stringAnders Damsgaard1+1-1
2014-08-26 08:32show message to userAnders Damsgaard1+1-0
2014-08-26 08:30clear OUTFILE on first outputAnders Damsgaard1+3-1
2014-08-26 08:27do not list contents of output folderAnders Damsgaard1+5-1
2014-08-26 08:25add nvcc version callAnders Damsgaard1+1-0
2014-08-26 08:25added diagnostics scriptAnders Damsgaard1+23-0
2014-08-21 11:46extend time of diffusion experimentsAnders Damsgaard1+1-1
2014-08-21 11:44quiet readsAnders Damsgaard1+1-1
2014-08-21 11:43disable debug outputAnders Damsgaard1+4-4
2014-08-21 11:29do not visualize in starter scriptAnders Damsgaard1+2-2
2014-08-21 11:09decrease shear velocityAnders Damsgaard1+1-1
2014-08-21 11:08use consolidation experiments with c=1.0 as input filesAnders Damsgaard1+4-2
2014-08-21 10:47added shear simulation starter scriptAnders Damsgaard1+48-0
2014-08-21 10:46use built-in coloring functionAnders Damsgaard1+1-15
2014-08-21 10:44fix device selectionAnders Damsgaard1+1-1
2014-08-21 10:43fix device selectionAnders Damsgaard1+1-1
2014-08-21 10:40add checkerboard color functionAnders Damsgaard1+23-0
2014-08-21 10:35added shear test job scriptsAnders Damsgaard6+294-0
2014-08-21 09:32let matplotlib handle colorAnders Damsgaard1+1-1
2014-08-21 09:31plot results from variable c, dpdz and K togetherAnders Damsgaard2+70-37
2014-08-21 09:04script to interpret and plot consolidation curvesAnders Damsgaard1+83-0
2014-08-21 09:03set coefficientsAnders Damsgaard2+18-14
2014-08-21 07:21disable text outputAnders Damsgaard1+2-1
2014-08-21 07:20improved plot qualityAnders Damsgaard3+30-11
2014-08-20 07:30fix loop behaviorAnders Damsgaard2+21-7
2014-08-18 09:56Interpret results from permeability{1-3}.pyAnders Damsgaard1+47-0
2014-08-15 17:51fixed out-of-grid errors in porosity estimation routine on non-periodic gridsAnders Damsgaard4+9-5
2014-08-15 10:01storing fluid interaction force components in outputAnders Damsgaard9+224-14
2014-08-14 13:59remove linear plotAnders Damsgaard1+0-1
2014-08-14 13:58improved porosity estimation. Interpolation is probably unpreciseAnders Damsgaard1+6-4
2014-08-14 13:44improved docstringAnders Damsgaard1+27-18
2014-08-14 12:55small correctionsAnders Damsgaard1+6-8
2014-08-14 12:53calculate consolidation coefficient and show it in plotAnders Damsgaard1+32-7
2014-08-14 12:05change data appearanceAnders Damsgaard1+1-1
2014-08-14 11:54add lines noting D0, D50 and D100Anders Damsgaard1+8-0
2014-08-14 11:50add function to plot load pathAnders Damsgaard1+25-1
2014-08-14 08:59rename job nameAnders Damsgaard1+1-1
2014-08-14 08:58new scripts to test diffusivityAnders Damsgaard2+123-0
2014-08-14 08:51fix setting of loadsAnders Damsgaard4+4-4
2014-08-13 12:52add cell size calculationAnders Damsgaard1+1-0
2014-08-13 12:47correct simulation idAnders Damsgaard1+1-1
2014-08-13 12:32correct pbs job nameAnders Damsgaard1+1-1
2014-08-13 12:18explore relationship between c_grad_p and KAnders Damsgaard3+147-0
2014-08-13 12:08increase time in permeability experimentsAnders Damsgaard1+1-1
2014-08-13 12:02fix lowermost particles so everything doesnt slide horizontallyAnders Damsgaard2+11-0
2014-08-13 11:54fix format type of colorAnders Damsgaard1+1-1
2014-08-13 11:32create vtk files in separate loopAnders Damsgaard2+9-2
2014-08-13 11:32fix vtk output for particlesAnders Damsgaard1+1-1
2014-08-13 10:48dont create plots of temporal evolutionAnders Damsgaard2+4-3
2014-08-13 10:30return vertical hydraulic conductivityAnders Damsgaard2+3-3
2014-08-13 09:53preallocate arraysAnders Damsgaard1+6-4
2014-08-13 09:46save figure, do not showAnders Damsgaard1+0-1
2014-08-13 09:32improved result analysis scriptAnders Damsgaard2+33-11
2014-08-13 09:22rename calculator fileAnders Damsgaard2+1-1
2014-08-13 09:20separate files for calculator and calculator usageAnders Damsgaard2+17-5
2014-08-13 09:09increase dampingAnders Damsgaard1+2-2
2014-08-13 09:06improved readability of hydraulic conductivity calculationsAnders Damsgaard1+11-4
2014-08-13 08:01improved output plotAnders Damsgaard1+30-31
2014-08-13 07:30fix typoAnders Damsgaard1+1-1
2014-08-13 07:30added plot file name outputAnders Damsgaard1+3-1
2014-08-13 07:29added permeability calculatorAnders Damsgaard1+170-0
2014-08-11 12:47initialize constants to double precision, clean up after testAnders Damsgaard2+32-17
2014-08-11 12:37add const and __restrict__ keywords to facilitate constant memory cache usageAnders Damsgaard7+996-1016
2014-08-11 08:16Merge branch 'master' of github.com:anders-dc/sphereAnders Damsgaard6+298-0
2014-08-11 08:10replaced .format with % expressions to speed up writeVTK() to gain 2x speedupAnders Damsgaard1+27-28
2014-07-30 11:42increase width of sid field in list outputAnders Damsgaard1+1-1
2014-07-30 10:37initialize c_phi and c_grad_phi as arraysAnders Damsgaard1+4-4
2014-07-30 10:33add another c_grad_p value simulationAnders Damsgaard1+49-0
2014-07-30 10:31added simulations with different c_grad_p valuesAnders Damsgaard2+98-0
2014-07-30 10:28added another porosity testAnders Damsgaard1+49-0
2014-07-30 10:27update job nameAnders Damsgaard1+1-1
2014-07-30 10:26added permeability experiments with 10% porosityAnders Damsgaard1+49-0
2014-07-30 10:22reenable runAnders Damsgaard1+1-4
2014-07-30 10:21improved argument handlingAnders Damsgaard1+17-5
2014-07-30 09:35universal starter for permeability experimentsAnders Damsgaard1+41-0
2014-07-30 08:41fix less particles on bottom right wallAnders Damsgaard1+1-1
2014-07-29 12:14fix signAnders Damsgaard1+2-2
2014-07-29 12:10added set of missing grid corner cell-face velocity ghost nodesAnders Damsgaard1+85-7
2014-07-28 13:51set default values for c_phi and c_grad_p for old filesAnders Damsgaard1+3-0
2014-07-28 13:38increment version numberAnders Damsgaard2+2-2
2014-07-28 13:36add scaling coefficients c_phi and c_grad_pAnders Damsgaard5+51-14
2014-07-28 12:44add long cmd line argAnders Damsgaard1+1-1
2014-07-28 12:43updated readmeAnders Damsgaard1+3-0
2014-07-28 09:38reenable other callsAnders Damsgaard1+2-2
2014-07-28 09:35change to cudaSetDevice callAnders Damsgaard1+2-1
2014-07-28 09:28do not run tests on GrendelAnders Damsgaard2+2-2
2014-07-28 09:25add information on automatically chosen deviceAnders Damsgaard2+7-2
2014-07-28 09:00correct constructor call, add error messageAnders Damsgaard7+13-8
2014-07-28 08:56remove exclusive flag, choose device on command line insteadAnders Damsgaard5+56-40
2014-07-28 08:25run in exclusive mode for GrendelAnders Damsgaard6+6-6
2014-07-28 08:23add exclusive parameter to run functionAnders Damsgaard1+8-2
2014-07-28 08:20only print device info if verbose flag is setAnders Damsgaard1+4-2
2014-07-28 08:12add initial value to fluidargAnders Damsgaard1+1-0
2014-07-28 08:01fix typoAnders Damsgaard1+1-1
2014-07-28 08:01fix more typosAnders Damsgaard1+2-2
2014-07-28 07:59fix typoAnders Damsgaard1+1-1
2014-07-28 07:58do not generate separate binary for porous flow, add exclusive mode flagAnders Damsgaard7+30-102
2014-07-28 07:30add exclusive command line argument to helpAnders Damsgaard1+4-2
2014-07-12 14:36reintroduce 10 DEM steps per CFD stepAnders Damsgaard8+8-8
2014-07-11 10:37set ndem=1Anders Damsgaard4+4-4
2014-07-11 10:36decreased ndem to standard value (1)Anders Damsgaard4+4-4
2014-07-07 06:28reversed order of release notesAnders Damsgaard1+12-12
2014-07-07 06:25added note on fluid discretizationAnders Damsgaard1+3-0
2014-07-05 15:21corrected input file name, increase max iteration numberAnders Damsgaard3+6-3
2014-07-04 17:15added template for shear experimentsAnders Damsgaard3+143-0
2014-07-04 15:16added scripts and Torque script for diffusivity experimentsAnders Damsgaard4+172-0
2014-07-04 13:08add Torque job scripts for two examplesAnders Damsgaard2+98-0
2014-07-04 13:04do not write vtk files as defaultAnders Damsgaard3+3-3
2014-07-04 13:04add input file for diffusivity experimentsAnders Damsgaard2+1-0
2014-07-04 13:02split permeability experiments into two-per-testAnders Damsgaard3+111-0
2014-07-04 13:00fixed permeability testAnders Damsgaard1+16-5
2014-07-04 12:44added tests for hydrological parametersAnders Damsgaard2+109-0
2014-06-30 10:46removed failing copy of constant memory to multi GPUsAnders Damsgaard1+4-4
2014-06-30 10:43working on multi-GPU call for interact routineAnders Damsgaard2+148-2
2014-06-30 08:53copy constant memory to all devicesAnders Damsgaard3+49-51
2014-06-30 08:20double precision comparisonAnders Damsgaard1+12-12
2014-06-30 08:18slight rearranging of outputAnders Damsgaard1+8-5
2014-06-30 08:13cleanup contactmodels.cuh, label in/out arrays, verbose runsAnders Damsgaard3+29-166
2014-06-30 08:04dynamically select GPU with most cuda coresAnders Damsgaard1+46-11
2014-06-30 07:21particle vtk files can be written without vtk moduleAnders Damsgaard1+4-7
2014-06-28 13:19run sphere quietlyAnders Damsgaard1+2-2
2014-06-28 13:11write interpolated velocitiesAnders Damsgaard1+11-6
2014-06-28 13:06Neumann tests passAnders Damsgaard1+7-6
2014-06-28 12:59fix host side vidxAnders Damsgaard1+1-1
2014-06-28 12:56use correct face index function for writing face velocitiesAnders Damsgaard3+13-10
2014-06-26 09:17write cell face velocities to filesAnders Damsgaard7+42-23
2014-06-24 20:01shorten default time step lengthAnders Damsgaard2+2-2
2014-06-24 15:08solver does not converge without at least 1 Dirichlet BCAnders Damsgaard1+3-3
2014-06-24 15:08added fluid-particle interaction testAnders Damsgaard1+3-0
2014-06-24 15:07fluid-particle interaction verifiedAnders Damsgaard1+4-6
2014-06-24 14:48increase standard DEM time step, 100 DEM steps per CFD stepAnders Damsgaard2+2-1
2014-06-24 14:29disable time, add fixed particles to end wallsAnders Damsgaard3+10-8
2014-06-24 12:46tests designed to check fluid-particle interaction termsAnders Damsgaard1+55-0
2014-06-24 12:46no slip BC on bottom, free slip on topAnders Damsgaard1+2-2
2014-06-24 12:35implemented Neumann BCs (free slip, no slip) from Griebel et al 1998, UNTESTEDAnders Damsgaard3+64-32
2014-06-24 10:22do not fix right and left boundary particlesAnders Damsgaard1+1-1
2014-06-23 06:57time executions by default, normal boundaries with fixed particlesAnders Damsgaard2+20-7
2014-06-22 20:02correct wall velocityAnders Damsgaard1+2-1
2014-06-22 16:20fix lowermost particlesAnders Damsgaard2+16-14
2014-06-22 09:43displacements as a vector instead of component wise scalarsAnders Damsgaard1+5-22
2014-06-22 08:40vtk module optionalAnders Damsgaard1+13-1
2014-06-22 07:40keep value as numpy arrayAnders Damsgaard1+1-1
2014-06-22 07:39update self.version after succesful readAnders Damsgaard1+1-0
2014-06-22 07:35only read Zdisplacement in new versionAnders Damsgaard2+8-4
2014-06-22 07:11write diameter instead of radius to VTK filesAnders Damsgaard1+8-8
2014-06-22 07:11added Zdisplacement componentAnders Damsgaard12+63-49
2014-06-22 06:31compressional strain calculated from wrong axisAnders Damsgaard1+1-1
2014-06-21 20:07disable viscositiesAnders Damsgaard1+8-0
2014-06-21 19:27equal aspec ratio in color cubesAnders Damsgaard1+2-2
2014-06-21 19:13fix object nameAnders Damsgaard1+2-2
2014-06-21 19:12don't cleanup before relaxation stepAnders Damsgaard1+1-1
2014-06-21 10:55added checkerboard coloring, disabled relaxation runAnders Damsgaard1+24-6
2014-06-20 20:48rebuilt documentationAnders Damsgaard5+391-32
2014-06-20 20:48small bugfixes in deleteParticleAnders Damsgaard1+2-2
2014-06-20 20:44add method to delete a single particleAnders Damsgaard1+26-0
2014-06-20 19:40add explicit call for periodic boundariesAnders Damsgaard4+14-0
2014-06-20 19:34normal boundaries by default. use periodicBoundariesX or periodicBoundariesXY if not desired!Anders Damsgaard2+10-4
2014-06-20 12:02add more information to dampening function outputAnders Damsgaard2+24-8
2014-06-20 11:53add methods to set damping and show ratio to critical valueAnders Damsgaard2+56-9
2014-06-20 11:35correct simulation lengths, clean up filesAnders Damsgaard2+5-3
2014-06-20 11:31reduce simulation time in wall testsAnders Damsgaard1+4-4
2014-06-20 11:28tangential viscous energy dissipated no matter if it slips or notAnders Damsgaard2+18-15
2014-06-20 11:23correct calls to viscous energy functionAnders Damsgaard1+5-4
2014-06-20 11:21norm of vel_tAnders Damsgaard1+1-1
2014-06-20 11:21viscous energy in tangential component added to evAnders Damsgaard3+38-11
2014-06-20 11:16frictional model verifiedAnders Damsgaard2+14-10
2014-06-20 11:10added new methods for other energy balance componentsAnders Damsgaard2+111-6
2014-06-20 10:34normal-viscous contact model verifiedAnders Damsgaard2+67-11
2014-06-20 09:46add separate functions for viscous dissipationAnders Damsgaard1+28-0
2014-06-20 09:40added contact model testsAnders Damsgaard4+83-8
2014-06-20 09:29fix function referenceAnders Damsgaard1+1-1
2014-06-20 09:27new helper functions for energy trackingAnders Damsgaard2+45-0
2014-06-20 08:39reworked vector norm and momentum functionsAnders Damsgaard1+14-17
2014-06-20 07:49added test of kinetic energy magnitude, corrected velocityAnders Damsgaard2+7-16
2014-06-20 07:35dont use rotational force in normal velocityAnders Damsgaard1+3-2
2014-06-20 07:30opposite sign on viscous termAnders Damsgaard1+1-1
2014-06-20 07:27wall normal force changed to avoid attraction, sign testAnders Damsgaard1+3-1
2014-06-19 12:58added dampeningAnders Damsgaard1+43-19
2014-06-19 12:43typo in timestep formulaAnders Damsgaard1+1-1
2014-06-19 12:42avoid attraction due to heavy dampingAnders Damsgaard1+2-1
2014-06-19 12:41new time step formulaAnders Damsgaard1+20-11
2014-06-19 09:15add coloringAnders Damsgaard1+25-17
2014-06-19 08:43add color to vtk filesAnders Damsgaard1+9-0
2014-06-19 08:32perform relaxation without dynamic wallsAnders Damsgaard1+8-9
2014-06-19 08:26added 'color' array for color indexAnders Damsgaard5+34-7
2014-06-19 08:22removed extra paranthesisAnders Damsgaard1+1-1
2014-06-19 08:20fixed typeAnders Damsgaard1+2-3
2014-06-19 07:59normal force >= 0 to avoid attractive forcesAnders Damsgaard1+3-1
2014-06-19 07:59fix dynamic wall positionAnders Damsgaard1+4-4
2014-06-18 14:11added shortening experiment scriptsAnders Damsgaard2+132-0
2014-06-18 10:35add credits to contributerAnders Damsgaard1+1-1
2014-06-18 10:34grid index fixAnders Damsgaard1+1-1
2014-06-18 09:46enabled 2d behavior if fixvel > 10Anders Damsgaard1+9-1
2014-06-18 09:43stgarted implementing slab on a slope, no slip boundaries missingAnders Damsgaard5+56-8
2014-06-18 08:03don't read div(tau) if inviscidAnders Damsgaard2+10-10
2014-06-18 07:57merge testsAnders Damsgaard2+0-3
2014-06-18 07:54clean up at endAnders Damsgaard1+1-0
2014-06-18 07:53added first simple test, removed debug outputAnders Damsgaard4+9-7
2014-06-18 07:42several functions moved outside np>0 conditional statementAnders Damsgaard4+82-74
2014-06-18 07:04fixed diagnosticsAnders Damsgaard1+6-6
2014-06-18 07:03more diagnostics upon failureAnders Damsgaard2+29-0
2014-06-18 06:58corrected grid boundary check, debugging cfdAnders Damsgaard3+20-5
2014-06-17 11:46neumann test passes with set2Anders Damsgaard1+3-5
2014-06-17 11:29set2, cfd_tests.py passesAnders Damsgaard3+6-5
2014-06-17 10:58only read interaction force if np>0. Set1 defaultAnders Damsgaard3+3-4
2014-06-17 07:49ghost node fix underwayAnders Damsgaard2+7-5
2014-06-09 13:23disable smoothing by defaultAnders Damsgaard2+4-5
2014-06-09 13:10cleanup cfd_tests, analysing cfd_tests_neumann outputAnders Damsgaard2+2-2
2014-06-09 13:05cfd_tests results verifiedAnders Damsgaard1+1-1
2014-06-09 12:59build type = releaseAnders Damsgaard1+5-5
2014-06-09 12:59no debug output, verifying testsAnders Damsgaard4+8-8
2014-06-09 10:57set missing ghost nodes for F_pf and div_phi_vi_vAnders Damsgaard3+17-5
2014-06-07 09:36back to cell-center f_pf and F_pfAnders Damsgaard3+15-4
2014-06-06 12:06renamed interaction force declarationAnders Damsgaard3+19-9
2014-06-06 11:35rename face array size varAnders Damsgaard1+14-13
2014-06-06 11:31rename outputAnders Damsgaard1+1-1
2014-06-06 11:30renamed interaction force on fluid vectorAnders Damsgaard1+9-9
2014-06-06 11:28debugging, last commit before moving F_pf to cell facesAnders Damsgaard4+33-31
2014-06-05 10:58report componentsAnders Damsgaard1+0-4
2014-06-05 10:51set ghost nodes for div(tau)Anders Damsgaard3+28-2
2014-06-05 10:15first corrections for velocity ghost node writingAnders Damsgaard2+55-16
2014-06-05 07:47small fixAnders Damsgaard1+2-2
2014-06-05 07:40non-verboseAnders Damsgaard1+3-3
2014-06-05 07:39use amean function instead of manual calculationAnders Damsgaard1+27-27
2014-06-05 07:32set v_p components to sensible values in ghost nodesAnders Damsgaard2+21-3
2014-06-05 06:39fixed segfault tau due to missing allocation of dev_ns_v_pAnders Damsgaard1+18-7
2014-06-05 06:19verified div(tau) and interaction force = 0Anders Damsgaard1+6-86
2014-06-05 05:40set pressure ghost nodes before used to determine pressure gradientAnders Damsgaard2+13-73
2014-06-05 05:31investigating segfaultm small fixesAnders Damsgaard3+16-13
2014-06-03 14:57removed face node pointers from hostAnders Damsgaard1+7-7
2014-06-03 14:56removed face node allocation and deallocation on hostAnders Damsgaard1+20-20
2014-06-03 14:52added ghost nodes to vidxAnders Damsgaard3+15-9
2014-06-03 14:45increase size of staggered grid array allocationAnders Damsgaard1+2-2
2014-06-03 14:27fix typos, the code compiles without errors or warningsAnders Damsgaard1+4-4
2014-06-03 14:25fix function and variable typeAnders Damsgaard1+6-6
2014-06-03 14:24fix indiciesAnders Damsgaard1+14-14
2014-06-03 14:21fix argumentsAnders Damsgaard2+19-19
2014-06-03 14:18possibly final staggered grid correctionsAnders Damsgaard3+26-20
2014-06-03 10:39corrected face/center indexingAnders Damsgaard1+19-18
2014-06-03 10:35split corrector step into twoAnders Damsgaard2+95-34
2014-06-03 09:05reformulated divergence() and forcing functionAnders Damsgaard2+18-53
2014-06-03 09:01reenable div_phi_vi_vAnders Damsgaard3+2-3
2014-06-03 09:00wrong gradientAnders Damsgaard1+1-1
2014-06-03 08:59last changes to velocity prediction function before compileAnders Damsgaard1+6-10
2014-06-03 08:51implemented staggered grid in several functionsAnders Damsgaard5+469-159
2014-05-27 06:38added cell_centered option to writeVTKallAnders Damsgaard2+9-7
2014-05-26 07:02New cfd-dem implementationAnders Damsgaard1+6-6
2014-05-23 12:35set2 as defaultAnders Damsgaard1+2-2
2014-05-23 11:46decreased convergence log interval, tests passAnders Damsgaard2+4-4
2014-05-23 11:34remove debug output from interaction force functionAnders Damsgaard1+2-2
2014-05-23 11:31remove const keywordAnders Damsgaard1+1-1
2014-05-23 11:30avoid chi=-nanAnders Damsgaard2+10-7
2014-05-23 11:15fixed io test fluidAnders Damsgaard3+17-15
2014-05-23 10:50avoid nan/inf values when |v_rel| = 0Anders Damsgaard1+10-1
2014-05-23 10:42div(tau) will give wrong values on first iterationAnders Damsgaard3+22-13
2014-05-23 09:18added information to maxNormResNS nan testAnders Damsgaard2+4-2
2014-05-23 09:11enabled debugging, small error in printfAnders Damsgaard2+12-12
2014-05-23 09:06changed debug flag typeAnders Damsgaard2+62-63
2014-05-23 09:01fixed v_p debug outputAnders Damsgaard1+38-45
2014-05-23 08:50added finite checks to interaction forcesAnders Damsgaard2+12-2
2014-05-23 08:46wrong unit in pressure predictionAnders Damsgaard2+3-4
2014-05-23 08:42implementation from zhou et al 2010, untestedAnders Damsgaard4+351-46
2014-05-20 08:06finished model A+B implementation, untestedAnders Damsgaard1+5-4
2014-05-20 07:59Option to switch between dem-cfd model A and BAnders Damsgaard3+68-61
2014-05-12 07:56fix free call placementAnders Damsgaard1+5-4
2014-05-12 07:49show status messages in alphabetical orderAnders Damsgaard1+16-12
2014-05-09 09:01updated documentationAnders Damsgaard8+20-7
2014-05-09 08:38cleanup after testsAnders Damsgaard1+1-0
2014-05-09 08:37small format changeAnders Damsgaard1+2-2
2014-05-09 08:27increase space for two digit timerAnders Damsgaard1+2-2
2014-05-09 07:50increased readability on list outputAnders Damsgaard1+8-3
2014-05-08 09:05enable fluid flowAnders Damsgaard1+2-2
2014-05-08 08:57improved helpAnders Damsgaard1+2-1
2014-05-08 08:55improved help message, added list optionAnders Damsgaard1+16-9
2014-05-08 08:41simulation list shows shorthand statusAnders Damsgaard1+28-18
2014-05-08 08:33added simulation listing if sphere_status is run without argumentsAnders Damsgaard1+38-11
2014-05-08 08:05added help messageAnders Damsgaard1+18-5
2014-05-08 07:37disabled upwind differences, reworked sphere status and build procedureAnders Damsgaard5+61-51
2014-05-07 14:23add comment on "cell data to point data" filterAnders Damsgaard1+13-8
2014-05-07 14:17visualize cell values at cell centers by defaultAnders Damsgaard1+71-11
2014-05-07 08:06incrementally update current timeAnders Damsgaard1+2-1
2014-05-07 08:03check CFL criteria in every fluid update on the GPUAnders Damsgaard1+17-10
2014-05-06 11:44fixed minor error in forcing function, added optional outputAnders Damsgaard3+28-13
2014-05-02 11:14testing pressure gradient forceAnders Damsgaard3+20-6
2014-05-02 07:55added fluid BC methods, testing stokes_law for dependence on CFD time stepAnders Damsgaard7+132-12
2014-05-01 17:11add subscripts to timerAnders Damsgaard1+1-1
2014-05-01 10:44Added simple particle-fluid testAnders Damsgaard1+77-0
2014-05-01 10:21minor column width fixAnders Damsgaard1+2-1
2014-05-01 09:06build type = releaseAnders Damsgaard1+5-5
2014-05-01 08:51implemented ndem parameter for DEM/CFD computation ratioAnders Damsgaard2+440-429
2014-04-30 10:01verified findDistMod changesAnders Damsgaard1+1-1
2014-04-30 09:47fixed findDistMod function to allow search across periodic boundaries of more than 1 cellAnders Damsgaard3+24-18
2014-04-30 06:47added ndem parameter, debugging fluid testsAnders Damsgaard4+42-11
2014-04-28 12:03back to using findPorositiesVelocitiesDiametersSphericalAnders Damsgaard2+15-10
2014-04-25 07:07testing new porosity method, set fluid=true in initFluidAnders Damsgaard3+25-25
2014-04-24 11:40added function for porosity gradient estimationAnders Damsgaard1+38-21
2014-04-24 08:14begun implementation of porosity gradient functionAnders Damsgaard1+196-12
2014-04-23 13:41uncommented upward differencesAnders Damsgaard1+106-1
2014-04-23 08:14fluid cell sphere diameter = cell widthAnders Damsgaard1+8-37
2014-04-23 07:55Removed gradient overloading as nvcc doesn't handle it correctlyAnders Damsgaard1+12-34
2014-04-22 13:33corrected error in forcing function and velocity correctionAnders Damsgaard16+62-61
2014-04-22 10:53reenabled term with dphiAnders Damsgaard1+1-1
2014-04-22 09:09renamed flagAnders Damsgaard2+2-2
2014-04-22 09:08add CFDDEMCOUPLING flagAnders Damsgaard2+5-2
2014-04-22 08:58removed phi testAnders Damsgaard1+24-21
2014-04-22 07:36Merge branch 'master' of github.com:anders-dc/sphereAnders Damsgaard8+165-434
2014-04-22 07:35removed extra components from checkFiniteFloatAnders Damsgaard1+12-4
2014-04-04 11:43Small correction to fluid-particle coupling, extra particle no check in writebinAnders Damsgaard2+29-26
2014-04-03 12:26Added dx exceptionAnders Damsgaard1+4-0
2014-04-03 11:05function overloading doesnt seem to work with device kernelsAnders Damsgaard1+55-44
2014-04-03 10:30Disable other plotsAnders Damsgaard1+2-2
2014-04-03 10:29Do not generate diffusion/advection plots by defaultAnders Damsgaard1+2-2
2014-04-03 08:58updated documentation to correct interaction force termAnders Damsgaard23+89-49
2014-04-03 08:47Corrected interaction force in velocity predictionAnders Damsgaard1+3-3
2014-04-03 07:40Gravitational drag on fluid correctedAnders Damsgaard1+9-17
2014-04-02 13:58sign error in fixvel evaluation, still debuggingAnders Damsgaard4+7-11
2014-04-02 13:29added deleteAllParticles method, debugging fluid solverAnders Damsgaard4+38-16
2014-04-02 07:41redundant line breakAnders Damsgaard1+0-1
2014-04-02 07:18updated documentationAnders Damsgaard5+59-42
2014-04-02 07:17Added option to fix particle horizontal and vertical velocityAnders Damsgaard3+14-4
2014-04-01 11:39Removed porosity forcing at iteration=20Anders Damsgaard1+4-8
2014-04-01 10:57added more checkFinite testsAnders Damsgaard1+46-0
2014-04-01 10:49Added tests to check if values in kernel are finite, modified porosity for porositytest.pyAnders Damsgaard2+80-2
2014-04-01 07:21Added fluid shear testAnders Damsgaard1+42-0
2014-03-31 11:39Added error handling if visualization method is called with empty self.radiusAnders Damsgaard1+5-1
2014-03-31 11:30fix typoAnders Damsgaard1+1-1
2014-03-31 11:29dilation in mean grain diameters as defaultAnders Damsgaard1+10-2
2014-03-31 11:27dilation in percent as defaultAnders Damsgaard1+4-3
2014-03-31 11:23disable adjustUpperWall call in shear since it resets the wall parametersAnders Damsgaard1+0-1
2014-03-31 10:37added syncthreadsAnders Damsgaard1+1-0
2014-03-31 10:36Add stress BC to top wall in shear functionAnders Damsgaard1+2-1
2014-03-31 09:10Change shear plot subplot layoutAnders Damsgaard1+2-2
2014-03-31 09:05call adjustUpperWall in shear functionAnders Damsgaard1+4-0
2014-03-31 09:00wall thickness should depend on particle size not grid sizeAnders Damsgaard1+2-1
2014-03-31 08:45new wall mass functionAnders Damsgaard1+11-5
2014-03-31 07:13Make sure nw=1 when doing a shear testAnders Damsgaard1+2-0
2014-03-27 12:27revised hydrostatic pressure distribution function to use prescribed value in the top cellsAnders Damsgaard1+2-2
2014-03-27 12:12Added functionality to initialize fluid with the hydrostatic pressure distributionAnders Damsgaard1+20-2
2014-03-27 08:07visualize function moved to sim classAnders Damsgaard1+362-366
2014-03-26 15:06Set all fluid parameters in initFluidAnders Damsgaard1+21-2
2014-03-26 15:01fix typoAnders Damsgaard1+1-1
2014-03-26 11:53allow initFluid on object that initially wasn't a fluid=True objectAnders Damsgaard1+1-1
2014-03-26 10:28Added cross references to solver parameter setting functionsAnders Damsgaard5+46-2
2014-03-26 09:30Periodic XY boundaries default in both particle and fluidAnders Damsgaard6+25-2
2014-03-26 09:30Periodic lateral boundaries as defaultAnders Damsgaard1+3-1
2014-03-26 08:47Second test shows strange behavior starting at output file 4Anders Damsgaard1+3-2
2014-03-25 14:34Longer test, changed parameter settingAnders Damsgaard2+9-7
2014-03-25 13:55Deleted old header file with solver parameters, fixed failing io testAnders Damsgaard2+4-47
2014-03-25 13:35Merge pull request #6 from anders-dc/ns-cfdAnders Damsgaard1+1-1
2014-03-25 13:22readme update for mergeAnders Damsgaard1+3-7
2014-03-25 13:17Merge pull request #5 from anders-dc/ns-cfdAnders Damsgaard383+13187-5319
2013-10-30 08:13added document explaining Darcy implementation and showing resultsAnders Damsgaard1+0-0
2013-10-30 08:12small changes in scriptsAnders Damsgaard3+85-60
2013-10-29 13:18darcy flow workingAnders Damsgaard7+398-293
2013-10-29 13:18hydraulic conductivity added to IOAnders Damsgaard2+55-8
2013-10-28 08:39removed irrelevant failing bond testAnders Damsgaard1+14-13
2013-10-22 13:20Added paraview req., fixed collision.pyAnders Damsgaard2+6-5
2013-10-22 13:14added python-vtk requirementAnders Damsgaard1+1-0
2013-10-22 13:11fixed fluid node offsetAnders Damsgaard1+5-2
2013-10-22 13:06python-vtk module required, can write fluid vtk dataAnders Damsgaard1+41-62
2013-10-22 11:38moved darcy arrays into Darcy structureAnders Damsgaard7+296-281
2013-10-22 08:10the idx function should be inlineAnders Damsgaard1+1-1
2013-10-22 07:54different comment styleAnders Damsgaard1+6-7
2013-10-22 07:18fatal error in cudaFree callsAnders Damsgaard1+16-12
2013-10-21 12:38added forgotten cudaFree calls to darcy arraysAnders Damsgaard1+13-0
2013-10-21 10:54added line counting scriptAnders Damsgaard1+2-0
2013-10-21 10:54darcy values should only be written if they are computedAnders Damsgaard1+6-4
2013-10-21 09:23added writeVTKall functionAnders Damsgaard1+79-0
2013-10-18 12:46writeVTK implemented and verifiedAnders Damsgaard1+257-7
2013-10-16 08:50numerous changes, added sphere based porosity est methodAnders Damsgaard6+288-183
2013-10-11 09:20tight_layout call fixes energy plot label overlapsAnders Damsgaard1+12-10
2013-10-11 09:00added example of granular collapseAnders Damsgaard1+86-0
2013-10-09 12:38first tests with Darcy kernels OK, input to python is notAnders Damsgaard1+26-10
2013-10-09 11:47removed status message from transferDarcyToGlobalDeviceMemoryAnders Damsgaard1+4-4
2013-10-09 11:43Darcy kernels disabled, IO verifiedAnders Damsgaard6+76-80
2013-10-09 11:43changed titleAnders Damsgaard1+2-2
2013-10-09 11:16added return statement to test outcomeAnders Damsgaard1+3-0
2013-10-09 11:13Added fluid IO testAnders Damsgaard3+224-15
2013-10-09 10:16fixed profiler outputAnders Damsgaard1+21-17
2013-10-09 09:22forgot to set ghost nodes on deviceAnders Damsgaard2+23-1
2013-10-09 09:11ported Darcy routines to CUDA, compiles, needs testingAnders Damsgaard4+898-116
2013-10-09 09:10fixed fatal bug in how threads return if outside of the gridAnders Damsgaard1+191-192
2013-10-04 12:40changed order of NVCC flagsAnders Damsgaard1+2-2
2013-10-03 12:02Code is now compiled for either FERMI or KEPLER archsAnders Damsgaard3+18-3
2013-10-02 09:59fixed error in addParticleAnders Damsgaard1+2-1
2013-10-01 17:33added readstep and addParticleAnders Damsgaard1+46-0
2013-09-28 08:17updated examplesAnders Damsgaard1+60-58
2013-09-28 08:16updated examplesAnders Damsgaard3+200-88
2013-09-28 07:25fixed particle zone thickness now determined from local particle radiiAnders Damsgaard1+14-4
2013-09-12 09:32Added some comments, nice indentationAnders Damsgaard1+15-19
2013-09-12 09:10d_K wasnt set, now working, periodic boundaries not working correctlyAnders Damsgaard2+80-41
2013-09-10 13:59Fixed error in CUDA versionAnders Damsgaard1+2-1
2013-08-27 11:59fixed bug in adjustUpperWallAnders Damsgaard1+4-6
2013-08-27 08:21added initialization to uniaxial.pyAnders Damsgaard1+2-2
2013-08-27 08:18added initialization to uniaxial.pyAnders Damsgaard1+33-0
2013-08-26 10:48small fixes in triaxial visualizationAnders Damsgaard1+3-3
2013-08-22 13:16updated time view to include total timeAnders Damsgaard1+2-1
2013-08-22 12:41added triaxial visualization methodAnders Damsgaard1+53-0
2013-08-22 11:04updated triaxial scriptAnders Damsgaard1+1-1
2013-08-22 11:02updated triaxial scriptAnders Damsgaard1+1-1
2013-08-22 07:45fixed output displayAnders Damsgaard1+4-9
2013-08-22 07:37Increased stdout status periodAnders Damsgaard1+1-1
2013-08-22 07:37Some triaxial bugfixesAnders Damsgaard1+1-1
2013-08-22 07:34Some triaxial bugfixesAnders Damsgaard2+27-17
2013-08-21 13:37sphere now only reports to stdout at a certain time step intervalsAnders Damsgaard1+8-2
2013-08-21 12:47added triaxial and uniaxial example scriptsAnders Damsgaard2+146-0
2013-08-21 12:46added triaxial simulation possibilitiesAnders Damsgaard4+156-64
2013-08-16 09:22general updatesAnders Damsgaard20+394-98
2013-08-16 09:21added a couple of permeability refs;Anders Damsgaard1+2-0
2013-07-04 19:40Added sphere python module to tests dirAnders Damsgaard1+2394-0
2013-06-29 10:11Darcy porous flow (CPU) implemented, awaiting testsAnders Damsgaard5+286-28
2013-06-24 13:51Renamed cell storativity to cell specific storativityAnders Damsgaard1+328-67
2013-06-13 10:45file write criteria changedAnders Damsgaard1+1-1
2013-06-12 10:37utility functions split into header and definition fileAnders Damsgaard5+24-27
2013-06-12 10:29Moved CPU utility functions to separate utility.hAnders Damsgaard5+112-55
2013-06-06 11:24more work on FD DarcyAnders Damsgaard3+99-23
2013-06-05 10:02Darcy flow seems correct, needs test against analytical solutionAnders Damsgaard7+107-34
2013-06-03 13:32Better integration of darcy flow into sphereAnders Damsgaard7+217-144
2013-06-03 13:07Added darcyflow parameter to initAnders Damsgaard1+6-2
2013-06-03 08:57Working on implementing darcy flowAnders Damsgaard6+801-182
2013-05-28 11:11Fluid grid values are only read/written if nu>0.0Anders Damsgaard5+90-72
2013-05-28 08:22Renamed darcy flow main file to porousflow. Darcy calls now in darcy.cppAnders Damsgaard3+29-75
2013-05-28 08:07Started darcy flow implementationAnders Damsgaard4+35-4
2013-05-24 08:34fixed error in shear visualization figure layoutAnders Damsgaard1+1-1
2013-05-24 08:32fixed indentation errorAnders Damsgaard1+1-1
2013-05-22 11:16Added video function to sphere classAnders Damsgaard1+103-24
2013-05-21 11:47Added darcy main fileAnders Damsgaard Christensen1+85-0
2013-05-02 08:36Fluid simulation only happens if periodic=1Anders Damsgaard3+7-7
2013-05-02 07:58Fixed threadsPerBlock valueAnders Damsgaard4+33-19
2013-05-01 15:07Added LBM fluid simulation, values offAnders Damsgaard10+247-61
2013-05-01 14:06changed to 3d thread layoutAnders Damsgaard1+381-371
2013-04-29 12:13First LB implementationAnders Damsgaard1+447-0
2013-04-11 08:29Sphere unsuccessfull return status changed to warningAnders Damsgaard1+2-2
2013-04-08 08:44Added porosity plot functionAnders Damsgaard1+15-1
2013-04-07 03:16sheardisp workingAnders Damsgaard Christensen1+0-1
2013-04-07 02:38added labelsAnders Damsgaard Christensen1+7-4
2013-04-07 02:27added sheardisp visualizationAnders Damsgaard Christensen1+40-0
2013-04-07 01:38mergeAnders Damsgaard Christensen1+0-20
2013-04-06 19:32tabs-spacesAnders Damsgaard Christensen2+31-9
2013-04-03 10:04cleaned up sphere.pyAnders Damsgaard Christensen1+52-70
2013-03-17 20:43Changed return value under dry runAnders Damsgaard1+1-1
2013-03-17 20:40Removed bond no. reportingAnders Damsgaard1+0-1
2013-03-17 20:25Merge branch 'varN' Sinusoidal modulation of N, choose w_devs_A=0.0 to disableAnders Damsgaard7+37-11
2013-03-17 20:22small fixesAnders Damsgaard14+75-198
2013-03-14 21:48Added details concerning helper_math.h file from the sdkAnders Damsgaard1+4-1
2013-03-14 18:25Added more torque-script generating functionsAnders Damsgaard1+52-4
2013-03-14 05:03Removed ref. by string from cameraInitAnders Damsgaard1+10-1
2013-03-14 04:39Added torqueScript3 for running three concurrent sphere instancesAnders Damsgaard1+44-0
2013-03-14 04:25Added torqueScript generating functionAnders Damsgaard1+58-2
2013-03-13 23:00Default build type: ReleaseAnders Damsgaard1+0-1
2013-03-13 22:58Threads per block limited to 256Anders Damsgaard1+4-1
2013-03-13 22:42Constant memory vars referenced directly, not by stringAnders Damsgaard1+7-1
2013-03-13 21:56added bold typeface to updateAnders Damsgaard1+1-1
2013-03-13 21:53Updated to CUDA 5.0Anders Damsgaard3+12-6
2013-03-13 04:45added circle marks for particles in ts with pos rotation around yAnders Damsgaard2+4-8
2013-03-12 21:10Added legacy read mode for old data filesAnders Damsgaard1+2-0
2013-03-12 21:09Added legacy read mode for old data filesAnders Damsgaard1+19-18
2013-03-12 21:07Particles spinning in pos. y direction are now marked with a black borderAnders Damsgaard2+32-2
2013-03-12 20:12Added bond breakingAnders Damsgaard3+26-0
2013-03-12 20:12Corrected range error in random number generationAnders Damsgaard1+10-2
2013-03-12 18:43changed to numpy.minimum in E_bond_pot functionAnders Damsgaard1+1-1
2013-03-12 05:09Added bondsRose, visualizing strike and dip of bondsAnders Damsgaard1+51-2
2013-03-12 04:53added forcechainsRose visualization methodAnders Damsgaard1+64-0
2013-03-12 04:30added forcechain vis. method (untested), fixed bond bugsAnders Damsgaard1+53-14
2013-03-11 22:34fixed nb0 value errorAnders Damsgaard1+4-3
2013-03-11 22:17created cond2linear, a function that bonds two particles randomlyAnders Damsgaard1+18-2
2013-03-11 21:01modified createBondPair descriptionAnders Damsgaard Christensen1+2-1
2013-03-11 20:54bonds working, tests passedAnders Damsgaard5+120-72
2013-03-07 17:36added potential energy stored in bondsAnders Damsgaard1+87-29
2013-03-07 17:36Bond model passes stability, normal, shear, and bend tests, but not twistAnders Damsgaard3+219-15
2013-02-23 20:09Added parallel bonds, still untestedAnders Damsgaard11+514-74
2013-02-22 20:46Added valgrind and cuda-memcheck tests for memory leaksAnders Damsgaard2+30-0
2013-02-22 20:45Removed x flagAnders Damsgaard1+0-0
2013-02-01 16:18Merge branch 'master' of https://github.com/anders-dc/sphereAnders Damsgaard1+1-1
2013-02-01 16:16removed value check when calculating porosityAnders Damsgaard1+1-1
2013-01-26 11:17tried to fix doc hyperlinksAnders Damsgaard1+1-1
2013-01-26 11:16removed tmp pdflatex filesAnders Damsgaard15+0-4412
2013-01-26 11:13Added links to doc buildsAnders Damsgaard1+2-1
2013-01-26 11:11Merge branch 'master' of https://github.com/anders-dc/sphere Merging documentation updatesAnders Damsgaard1+22-12
2013-01-26 11:10Documentation now available in pdf formatAnders Damsgaard19+1122-1122
2013-01-26 11:02changed build path for latexpdf, changed author nameAnders Damsgaard56+19452-3
2013-01-25 14:32bonds implementedAnders Damsgaard1+37-11
2013-01-25 14:23added sphere.py symlinkAnders Damsgaard1+2-0
2013-01-25 14:21Tests incorporated with CMakeAnders Damsgaard6+159-12
2013-01-24 14:55Only a single spherebin is passed to the raytracer at a timeAnders Damsgaard1+3-3
2013-01-24 13:07Const. mem should not be transfered after the first input fileAnders Damsgaard3+55-23
2013-01-24 10:16fixed bug in class render functionAnders Damsgaard1+4-4
2013-01-15 10:48Force chain visualization implementedAnders Damsgaard4+209-106
2013-01-14 15:09force chain output workingAnders Damsgaard1+54-9
2013-01-14 12:09fixed alloc errorAnders Damsgaard1+6-6
2013-01-14 12:01corrected error in forcechains()Anders Damsgaard1+5-5
2013-01-14 11:49Method flag chooses rendering implicitlyAnders Damsgaard1+2-0
2013-01-14 11:47Implemented simple force chain visualization with asymptoteAnders Damsgaard4+199-0
2013-01-14 09:40Changed dilation unit in shear visualization to metersAnders Damsgaard1+1-1
2013-01-11 08:24Thin section video function addedAnders Damsgaard1+34-0
2013-01-10 12:01Added thin-section visualization methodAnders Damsgaard2+24-5
2013-01-09 15:05Changed dilation output formatAnders Damsgaard2+245-2
2013-01-04 12:14added optional lower cutoff for particles rendered with a colorbarAnders Damsgaard3+69-20
2013-01-02 11:57changed fig text precisionAnders Damsgaard1+1-1
2013-01-02 11:51changed fig text precisionAnders Damsgaard1+2-2
2013-01-02 11:43moved tau_u textAnders Damsgaard1+1-1
2013-01-02 11:42moved tau_u textAnders Damsgaard1+2-2
2013-01-02 11:33bugfix in fig titleAnders Damsgaard1+1-1
2013-01-02 11:23Added tau_u annotation to shear visualizationAnders Damsgaard1+58-72
2013-01-02 08:57Fixed porosity calculator and added porosity testsAnders Damsgaard4+123-23
2012-12-27 10:57Changed format of txt output values in shear visualization methodAnders Damsgaard1+2-2
2012-12-26 12:49Fixed txt shear outputAnders Damsgaard1+234-232
2012-12-19 12:45CUDA set as required in cmakeAnders Damsgaard1+1-1
2012-12-19 12:32Build type now set in root CMakeLists.txtAnders Damsgaard2+3-9
2012-12-19 10:53Shear-test also initializes and consolidatesAnders Damsgaard1+2-2
2012-12-19 10:52Added shear-testAnders Damsgaard1+128-0
2012-12-19 10:46x-axis in shear visualization now shear strainAnders Damsgaard1+6-6
2012-12-19 10:17notes on behaviour if SDK is not found addedAnders Damsgaard1+4-2
2012-12-19 10:14Renamed commands calling sphere to short formatAnders Damsgaard1+4-4
2012-12-19 10:10Minor markup changesAnders Damsgaard1+2-2
2012-12-19 10:10Changed eye posAnders Damsgaard1+5-3
2012-12-19 10:10Removed manual MakefileAnders Damsgaard1+0-135
2012-12-19 10:02Added INSTALL.sh for linuxAnders Damsgaard1+2-0
2012-12-19 10:01CMake now used as the build systemAnders Damsgaard3+62-5
2012-12-18 12:58Removed legacy raytracer folder, moved rt doc into main docAnders Damsgaard34+264-1750
2012-12-18 12:15Removed header from porosity outputAnders Damsgaard1+1-1
2012-12-18 12:15Fixed linarr memtransfer errorAnders Damsgaard1+4-3
2012-12-18 09:39Porosities are now written to stdout, not a fileAnders Damsgaard2+11-14
2012-12-17 19:17Added empty boost unit testAnders Damsgaard Christensen2+19-0
2012-12-17 14:47porosity function seems to workAnders Damsgaard1+3-0
2012-12-17 14:17porosity function seems to workAnders Damsgaard4+95-28
2012-12-17 12:52Renamed torqueScript email parametersAnders Damsgaard1+0-0
2012-12-17 12:51Renamed torqueScript email parametersAnders Damsgaard1+2-2
2012-12-13 21:41Unfinished torqueScript function addedAnders Damsgaard Christensen1+23-0
2012-12-13 09:51Removed exceptions as dinosaur python distributions on grendel do not support themAnders Damsgaard1+0-5
2012-12-11 08:38Removed bug that caused unspec. launch failure when nw=0Anders Damsgaard2+53-15
2012-12-06 21:08documentation build folder now build, small update to sphere usageAnders Damsgaard Christensen2+5-5
2012-12-06 20:41porosity main addedAnders Damsgaard1+88-0
2012-12-06 20:39doc contains sphere output, porosity implementation begunAnders Damsgaard7+160-20
2012-12-06 07:09Introduction finishedAnders Damsgaard Christensen4+63-16
2012-12-05 21:42updated readmeAnders Damsgaard Christensen1+3-6
2012-12-05 21:41updated readmeAnders Damsgaard Christensen1+17-13
2012-12-05 14:05Legend in shear visualization stress plot in lower rightAnders Damsgaard1+1-1
2012-12-05 13:52Dilation in shear vis. now in percentAnders Damsgaard1+4-3
2012-12-05 12:20C++ reference moved into sphere internalsAnders Damsgaard3+8-9
2012-12-05 12:13Further subdivided docs into separate filesAnders Damsgaard5+216-316
2012-12-05 08:03Introduction partially reformattedAnders Damsgaard Christensen1+6-6
2012-12-04 21:12updated readmeAnders Damsgaard Christensen1+1-1
2012-12-04 21:11updated readmeAnders Damsgaard Christensen1+12-12
2012-12-04 21:10updated readmeAnders Damsgaard Christensen1+14-16
2012-12-04 21:09updated readmeAnders Damsgaard Christensen1+21-16
2012-12-04 21:06Added input folder auto generationAnders Damsgaard Christensen1+4-1
2012-12-04 21:05Removed elastic-debug folder and contentsAnders Damsgaard Christensen1+0-2
2012-12-04 20:59Further work on converting latex doc to rst formatAnders Damsgaard Christensen4+331-3
2012-12-04 19:48Added separate rst files for python api and c++ ckass referenceAnders Damsgaard Christensen4+35-4
2012-12-04 19:38Removed doxygen HTML outputAnders Damsgaard Christensen1+2-1
2012-12-04 19:11Fixed relative path, added MakefileAnders Damsgaard Christensen2+3-1
2012-12-04 19:09Doxygen conf file addedAnders Damsgaard1+1792-0
2012-12-04 18:44Fixed stray tab chars and python3 print callsAnders Damsgaard Christensen1+11-11
2012-12-04 13:28Added cudaCHooseDeviceAnders Damsgaard1+2-2
2012-12-04 12:33added error message if undefined visualization method is calledAnders Damsgaard1+2-0
2012-12-04 12:17added shebangAnders Damsgaard1+1-1
2012-12-04 10:32Removed path to 32 bit libsAnders Damsgaard1+2-5
2012-12-04 08:49Removed newlineAnders Damsgaard1+0-1
2012-12-03 15:12Removed bug - dev_wforce_pp should always be writtenAnders Damsgaard1+1-4
2012-12-03 08:46Header file dependencies split into C and CUAnders Damsgaard1+6-5
2012-11-30 20:59Added sphinx documentation, still to be populatedAnders Damsgaard3+423-0
2012-11-29 21:12Added missing math mode end symbolAnders Damsgaard1+2-2
2012-11-29 21:11Added legend to shear stress in visualize(shear)Anders Damsgaard1+1-1
2012-11-29 21:10Added legend to shear stress in visualize(shear)Anders Damsgaard1+1-1
2012-11-29 20:17reconfigured shear() to not touch upper wall parametersAnders Damsgaard1+8-5
2012-11-29 17:33video() adapted to new file name formatAnders Damsgaard1+19-5
2012-11-29 10:35Changed multiline comment symbolAnders Damsgaard1+35-35
2012-11-29 10:16Added grid lines to all visualization plotsAnders Damsgaard1+15-0
2012-11-29 10:13log dev stress vs void ratio plot added to walls visualizationAnders Damsgaard1+21-7
2012-11-29 09:43Added missing +Anders Damsgaard1+1-1
2012-11-29 09:42non-menber render function now includes methodAnders Damsgaard1+10-2
2012-11-29 09:31Added effective and prescribed stress values to shear visualizationAnders Damsgaard1+10-8
2012-11-29 09:29Fixed wall velocity errorAnders Damsgaard1+1-1
2012-11-29 09:00Added half-step leapfrog Verlet integration scheme to wallsAnders Damsgaard3+24-3
2012-11-28 14:12when rendering, dont check valuesAnders Damsgaard1+3-1
2012-11-28 13:57Added plot of effective and defined stress to wall visualizationAnders Damsgaard1+3-1
2012-11-28 13:37Fixed indentationAnders Damsgaard1+17-16
2012-11-28 13:28Cleaned up, and reformatted commentsAnders Damsgaard1+67-73
2012-11-28 13:05Auto-indented all source files, added modelineAnders Damsgaard28+3679-50772
2012-11-28 12:41Various wforce changesAnders Damsgaard3+10-4
2012-11-28 12:36Fixed typoAnders Damsgaard1+1-1
2012-11-28 12:34Added self to member function callsAnders Damsgaard1+6-6
2012-11-28 09:07Moved general upper wall routines into functionsAnders Damsgaard1+52-47
2012-11-27 13:46Fixed indentation error in visualizeAnders Damsgaard1+2-2
2012-11-27 13:46Fixed indentation error in visualizeAnders Damsgaard1+91-91
2012-11-27 13:27tests updatedAnders Damsgaard1+1-1
2012-11-27 13:23Removed cuPrintf.cuhAnders Damsgaard1+0-130
2012-11-27 12:46Removed report of wall valuesAnders Damsgaard1+0-13
2012-11-27 12:46Changed write format of wmodeAnders Damsgaard1+2-1
2012-11-27 12:45Bugfix-related changesAnders Damsgaard3+20-4
2012-11-27 12:44Corrected critical read bugAnders Damsgaard1+3-2
2012-11-27 11:50Changed input argumentsAnders Damsgaard1+3-3
2012-11-27 11:49Added mu_ws and mu_wd zeroing in shear()Anders Damsgaard1+16-8
2012-11-27 07:50Updated wall integration schemeAnders Damsgaard1+5-5
2012-11-22 13:25contactLinear improved. Not enough energy is dissipated as frictionAnders Damsgaard1+42-34
2012-11-22 11:26fixed indentation error for visualize()Anders Damsgaard1+2-2
2012-11-22 09:46changed display environmentAnders Damsgaard1+1-1
2012-11-22 09:43Removed cuPrintf.cuAnders Damsgaard1+1-1
2012-11-22 09:39further benchmarking of contact model 1Anders Damsgaard2+46-8
2012-11-19 15:20Fixed critical bug in integration scheme, still debugging contactLinearAnders Damsgaard3+76-55
2012-11-19 08:16defaultParams now uses mu values instead of phi anglesAnders Damsgaard1+1227-1218
2012-11-19 08:09defaultParams now uses mu values instead of phi angles as argumentsAnders Damsgaard1+10-7
2012-11-14 13:15Raytracer only calls cudaFree(linarr) when it has been allocatedAnders Damsgaard4+12-6
2012-11-14 11:49Changed tests to new digit format of bin filesAnders Damsgaard1+29-29
2012-11-14 09:21Made time step more conservative, validated new integration schemeAnders Damsgaard1+2-1
2012-11-13 19:36Half-step leapfrog Verlet integration scheme addedAnders Damsgaard Christensen3+109-57
2012-11-13 15:04Currently experimenting with integration schemesAnders Damsgaard9+166-101
2012-11-09 21:16Added memtransfer and error checksAnders Damsgaard Christensen1+8-3
2012-11-09 21:09Added cudaMemcpy for linarr, fixed syntax typoAnders Damsgaard Christensen1+11-2
2012-11-09 21:03Changed type of linarr. Linarr still needs memcpyAnders Damsgaard Christensen1+2-1
2012-11-09 21:01More color visualization methods added.Anders Damsgaard Christensen2+124-70
2012-11-09 20:26img_out and output folders are now made automaticallyAnders Damsgaard Christensen1+9-1
2012-11-09 20:23Raytracer incorporated into sphere program, and is workingAnders Damsgaard7+537-29
2012-11-08 11:31The output number should be printed in five digitsAnders Damsgaard1+2-2
2012-11-08 11:25Changed format for writing, and contact model value reportAnders Damsgaard1+2-2
2012-11-08 11:24Changed order in params structAnders Damsgaard1+4-4
2012-11-08 11:24Reformatted outputAnders Damsgaard1+20-15
2012-11-06 13:26Raytracer now workingAnders Damsgaard11+68-346
2012-11-04 15:52Raytracer included as cuh header file, compiles without warningsAnders Damsgaard5+23-594
2012-11-04 12:05More progress on implementing raytracer into DEM moduleAnders Damsgaard5+84-20
2012-11-02 08:29IO now works in Python, C++ and CUDA, see python/tests.py. Now working on implementing raytracerAnders Damsgaard11+315-258
2012-10-31 18:38Bugfixes, however still segfaultingAnders Damsgaard5+144-88
2012-10-31 07:59Fixed typoAnders Damsgaard1+2-2
2012-10-31 07:58Wall viscosities now in constant parameter structure. Dynamic arrays now transfered one-by-oneAnders Damsgaard3+68-25
2012-10-31 07:57Added wall viscosities to wall contact model, added static/dynamic frictionsAnders Damsgaard1+10-3
2012-10-30 14:14Added cmd-line arg processingAnders Damsgaard6+96-52
2012-10-30 12:35All IO routines are now working correctlyAnders Damsgaard11+374-369
2012-10-29 13:21File read in file_io.cpp not working. Trying C++ method insteadAnders Damsgaard1+246-156
2012-10-29 12:41Added custom compare function to SpherebinAnders Damsgaard1+93-34
2012-10-28 20:42Modified __init__ and IO functions of Spherebin to new binary format. Still untested.Anders Damsgaard Christensen1+123-143
2012-10-26 22:37It compiles without errors. Still need to update sphere.py to new file formatAnders Damsgaard9+181-184
2012-10-26 21:15Changed to class type in free...Anders Damsgaard Christensen1+25-25
2012-10-26 21:13BugfixesAnders Damsgaard Christensen2+15-14
2012-10-26 21:09Removed contact information outputAnders Damsgaard Christensen1+2-2
2012-10-26 21:08Added destructor declarationAnders Damsgaard Christensen1+3-0
2012-10-26 21:05Further work on implementing OOAnders Damsgaard Christensen7+297-321
2012-10-26 19:19Restructuring code to OOAnders Damsgaard2+25-109
2012-10-26 14:01Big restructuring, moving towards OO formAnders Damsgaard11+915-963
2012-10-24 13:40Removed nostats flag from ffmpeg flagAnders Damsgaard1+22-0
2012-10-24 11:20Added ffmpeg video() command to sphere moduleAnders Damsgaard1+2-0
2012-10-23 12:09Removed DEVCODE optionAnders Damsgaard2+5-2
2012-10-23 12:08Removed DEVCODE optionAnders Damsgaard2+4-1
2012-10-23 08:42Removed debug breakpointsAnders Damsgaard1+6-15
2012-10-23 07:59Reordered output during const. mem. checkAnders Damsgaard1+1-2
2012-10-22 18:42cuPrintf calls removedAnders Damsgaard1+0-24
2012-10-22 18:41Now with correct sizeof() parameterAnders Damsgaard4+207-81
2012-10-22 12:28Renamed gamma_ws to gamma_wtAnders Damsgaard1+1-1
2012-10-22 09:37gamma_ws renamed to gamma_wtAnders Damsgaard3+4-4
2012-10-22 08:10Most constant device parameters are moved to structures devC_params and devC_gridAnders Damsgaard10+181-198
2012-10-19 14:53Added cuda install path to makefileAnders Damsgaard1+2-2
2012-10-19 14:11Changed output format for profiling statisticsAnders Damsgaard1+8-8
2012-10-19 13:29savefig=True as default in visualize()Anders Damsgaard1+7-6
2012-10-19 07:57Makefile updated, assuming nvcc is in the pathAnders Damsgaard1+4-3
2012-10-17 08:59Profiling output now default ONAnders Damsgaard1+1-1
2012-10-17 08:59Finished implementation of Hertzian contact model. Still untestedAnders Damsgaard2+8-2
2012-10-16 15:23Removed problematic symbolsAnders Damsgaard2+2-2
2012-10-16 15:07contactLinear defaultAnders Damsgaard1+1-1
2012-10-16 14:26Hertzian nonlinear contact model added. Untested.Anders Damsgaard2+28-21
2012-10-16 14:18Fixed spring readjustment value in contactLinear, added contactHertzAnders Damsgaard1+182-12
2012-10-16 10:26Expanded profiling informationAnders Damsgaard1+18-8
2012-10-15 13:02Changed memory free callsAnders Damsgaard1+3-3
2012-10-15 12:29Shearmodel=2 refinementsAnders Damsgaard7+142-42
2012-10-12 09:41Added default values to parameters in init, added grid fitting functionsAnders Damsgaard1+55-12
2012-10-12 08:42Updated raytracer for angpos arraysAnders Damsgaard1+3-3
2012-10-11 09:30README updatedAnders Damsgaard1+2-2
2012-10-11 09:05Removed redundant zeroing of delta_tAnders Damsgaard9+23-432
2012-10-11 07:28Added angular position information in datafiles and on deviceAnders Damsgaard6+60-8
2012-10-11 06:51Contactmodels changesAnders Damsgaard1+2-2
2012-10-10 09:37Added break when contact is found in contact listAnders Damsgaard1+4-2
2012-10-10 09:30Removed error messageAnders Damsgaard1+0-2
2012-10-10 09:28Possible major bugfix; reuse of old contact positionsAnders Damsgaard1+3-2
2012-10-10 09:02Removed NC error reporting, an error exception system is neededAnders Damsgaard3+19-27
2012-10-10 08:50Redirected error messages to stderr, and added error handling if the number of contacts exceeds NCAnders Damsgaard5+37-20
2012-10-10 08:12Added xsum visualization in raytracerAnders Damsgaard3+21-4
2012-10-10 07:42Multiplot rearrangementAnders Damsgaard1+10-10
2012-10-10 07:36Removed trailing charAnders Damsgaard1+1-1
2012-10-10 07:35Preallocation of Es and Es_dot in energy visualizationAnders Damsgaard1+2-0
2012-10-10 07:33Added visualization method for viscous dissipationAnders Damsgaard1+45-24
2012-10-09 12:02Dot product for finding path along forceAnders Damsgaard1+1-1
2012-10-09 11:58Force length insted of vector in es_dotAnders Damsgaard1+1-1
2012-10-09 11:56Added energy loss calculation for normal viscous damping, and corrected frictional energy loss calculationAnders Damsgaard1+10-1
2012-10-09 07:33Changed input algorithm for raytracer to handle evAnders Damsgaard1+8-0
2012-10-04 18:44Added ev and ev_dot arrays for energy lost to viscous damping. Values not writtenAnders Damsgaard7+65-20
2012-09-30 19:51Removed rolling radius, substituted with radius_aAnders Damsgaard1+10-5
2012-09-30 19:42Added more syncthreads() to contactsearchAnders Damsgaard1+4-1
2012-09-26 09:51Changed units in sigma and tau from hPa to kPaAnders Damsgaard1+2-2
2012-09-26 09:45Changed units in xdisp from cm to mmAnders Damsgaard1+1-1
2012-09-26 09:10Updated shear stress output to text fileAnders Damsgaard1+1-0
2012-09-26 08:20Added text-file output for shear stress dataAnders Damsgaard1+104-79
2012-09-25 07:17Merge branch 'master' of https://github.com/anders-dc/sphereAnders Damsgaard3+82-69
2012-09-25 07:17shearmodel=2 now uses contactLinearAnders Damsgaard1+7-7
2012-09-10 07:44Reordered wall integration kernelAnders Damsgaard1+12-15
2012-09-07 07:00Substituted contactLinear with contactLinearViscous in shearmodel=2Anders Damsgaard1+7-7
2012-09-06 12:50Changed default parameter valuesAnders Damsgaard1+9-9
2012-09-06 12:38Removed precision reporting during file writeAnders Damsgaard1+0-2
2012-09-06 12:31Re-enabled wmode in wall integrationAnders Damsgaard1+5-5
2012-09-06 12:22Added missing [j] in sizeof operation during writeAnders Damsgaard3+5-11
2012-09-06 11:36Renamed exec to runAnders Damsgaard1+1-1
2012-09-06 11:33Added exec python function, which executes sphere with a target projectAnders Damsgaard1+6-0
2012-09-06 11:09Added missing wmode write in single precisionAnders Damsgaard2+12-2
2012-09-06 08:51Bugfixes in porosity()Anders Damsgaard1+7-9
2012-09-06 06:43wmode read disabledAnders Damsgaard1+1-1
2012-09-06 06:43shearmodel=2 contact model back to contactLinearAnders Damsgaard1+7-7
2012-09-06 06:33Removed recursive option for make clearAnders Damsgaard1+2-2
2012-09-06 06:28Added porosity()Anders Damsgaard1+76-0
2012-09-05 07:51Temporarily removed wmode=1 wall integrationAnders Damsgaard1+4-4
2012-09-04 07:22Temporarily replaced contactLinear with contactLinearViscous in shearmodel2Anders Damsgaard1+6-9
2012-09-04 07:07Replaced __umul24 multiplication functions with standard multiplication operatorsAnders Damsgaard2+8-17
2012-09-03 12:35Renamed N to FAnders Damsgaard1+5-5
2012-09-03 12:27overlapsInCell renamed to findAndProcessContactsInCellAnders Damsgaard2+22-21
2012-09-03 12:21Changed name of force sum to F instead of NAnders Damsgaard2+20-20
2012-09-03 12:18Added comments to contact search functionsAnders Damsgaard1+19-5
2012-09-03 11:59Added new raytracer makefileAnders Damsgaard1+28-20
2012-08-30 12:04Broad commitAnders Damsgaard4+30-29
2012-08-30 10:47Added uniaxialStrainRateAnders Damsgaard1+25-1
2012-08-30 09:54Added velocity BC to wall integration algorithmAnders Damsgaard1+18-8
2012-08-30 09:47Added missing &Anders Damsgaard1+1-1
2012-08-30 09:46wmode addedAnders Damsgaard1+1-0
2012-08-30 09:46host_wmode removedAnders Damsgaard1+2-4
2012-08-30 09:36wmode addedAnders Damsgaard1+1-0
2012-08-30 09:34wmode addedAnders Damsgaard1+5-0
2012-08-30 09:34Added wmodeAnders Damsgaard1+49-22
2012-08-30 08:54Wall mode parameter addedAnders Damsgaard1+8-1
2012-08-30 07:18Fixed indentation errorAnders Damsgaard1+5-5
2012-08-29 13:13Fixed breakline typoAnders Damsgaard1+2-2
2012-08-29 12:16Added python script for uniaxial compression experimentAnders Damsgaard1+136-0
2012-08-29 11:56Added void ratio functionAnders Damsgaard1+15-0
2012-08-28 07:47PPM->JPEG conversion in parallelAnders Damsgaard2+8-10
2012-08-28 06:34Raytracer scripts updated to sequential rendering to avoid proc overflowAnders Damsgaard2+10-8
2012-08-27 15:17Readme correctedAnders Damsgaard1+1-1
2012-08-27 14:51Parameters k_s and gamma_s renamed to k_t and gamma_t to refer to geometryAnders Damsgaard7+40-40
2012-08-27 12:15Code cleanupAnders Damsgaard1+6-3
2012-08-27 11:51Merged distmod routines into single functionAnders Damsgaard1+72-100
2012-08-24 07:44Lowered default time step lengthAnders Damsgaard1+2-1
2012-08-23 11:44Changed default values of physical parametersAnders Damsgaard1+200-175
2012-08-23 11:25Profiling flag set to 0 as defaultAnders Damsgaard1+1-1
2012-08-23 08:27Updated README, doc still outdatedAnders Damsgaard1+2-4
2012-08-23 08:20Get CWD modificationsAnders Damsgaard1+3-3
2012-08-23 08:17Changed error return method and added precision reportingAnders Damsgaard1+80-67
2012-08-22 11:19Updated sourcesAnders Damsgaard11+849-1960
2012-08-20 14:39Added missing o-ppm.cppAnders Damsgaard3+37-0
2012-08-20 14:36Major revision: Double precision, kernels split into separate sourcesAnders Damsgaard24+3215-997
2012-04-16 13:20Updated readmeAnders Damsgaard Christensen1+6-0
2012-04-16 12:52Several important bugfixesAnders Damsgaard Christensen13+839-443
2012-02-23 11:19Wall visualilzation changedAnders Damsgaard Christensen1+14-15
2012-02-23 11:18Elastc shearmodel fixedAnders Damsgaard Christensen1+37-35
2012-02-22 09:23Public github launchAnders Damsgaard Christensen55+58542-0