commit 0dee2d7b5778ed51558624c2665a332297e4634a
parent 09f387f0958c5dcd46b64aa8d46b35a5d465d385
Author: Anders Damsgaard <anders@adamsgaard.dk>
Date: Tue, 5 May 2020 09:22:14 +0200
Remove file added by mistake
Diffstat:
1 file changed, 0 insertions(+), 71 deletions(-)
diff --git a/code/spm/spm-3.4.8/startspm.sh b/code/spm/spm-3.4.8/startspm.sh
@@ -1,71 +0,0 @@
-#!/bin/bash
-
-if [ $# -eq 0 ]; then
- echo "usage: $0 <SPMFOLDER> <MODELFOLDER> <QUEUE>"
- echo "No arguments supplied. Example:"
- echo " $0 ~/spm-3.1.3 ~/a1 q4"
-else
-
-EMAIL=david@geo.au.dk
-
-MODELFOLDER=$2
-
-#QUEUE=q4
-QUEUE=$3
-CORES=12
-
-HOURS=48
-
-#SPMFOLDER=~/spm-3.1.3
-SPMFOLDER=$1
-BIN=spm
-
-echo "Removing old files from the model output directory"
-rm -rf $MODELFOLDER/output/*
-
-echo "#!/bin/bash
-# These commands set up the Grid Environment for your job:
-
-# Job name and folder. Edit both this entry and MODELFOLDER!!
-#PBS -N `basename $MODELFOLDER`
-
-# Specify job requirements.
-# How many nodes (nodes) to use, no. of cores (ppn)?
-# The process walltime (hh:mm:ss)?
-#PBS -l nodes=1:ppn=$CORES,walltime=$HOURS:00:00
-
-# Specify queue
-# q4, q8, qfat, q12, q12fat
-#PBS -q $QUEUE
-
-# Your e-mail address
-#PBS -M $EMAIL
-
-# Mail options:
-# a: Mail is sent when the job is aborted by the batch system
-# b: Mail is sent when the job begins execution
-# e: Mail is sent when the job terminates
-#PBS -m abe
-
-MODELFOLDER=$MODELFOLDER
-
-# Print the user@hostname, the time and the date
-echo '\`whoami\`@\`hostname\`'
-echo 'Start at \`date\`'
-
-# Compile the program
-cd $SPMFOLDER/source && make
-
-# Run the model
-$SPMFOLDER/$BIN $MODELFOLDER
-
-# Print the time and date again
-echo 'End at \`date\`'
-" > $MODELFOLDER/job-script.sh
-
-echo "Job script written as $MODELFOLDER/job-script.sh"
-echo "cd $MODELFOLDER && qsub job-script.sh"
-cd $MODELFOLDER && qsub job-script.sh
-echo "Submitted with Torque. See status of your jobs with 'mj'"
-
-fi
